Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KH172YL63_RS20485 Genome accession   NZ_AP022842
Coordinates   4041422..4041799 (-) Length   125 a.a.
NCBI ID   WP_173107813.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4036422..4046799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS20470 (KH172YL63_40300) - 4036525..4038168 (+) 1644 WP_173107810.1 hypothetical protein -
  KH172YL63_RS20475 (KH172YL63_40310) - 4038161..4040986 (+) 2826 WP_173107811.1 DEAD/DEAH box helicase -
  KH172YL63_RS20480 (KH172YL63_40320) - 4041222..4041395 (-) 174 WP_173107812.1 hypothetical protein -
  KH172YL63_RS20485 (KH172YL63_40330) ssbB 4041422..4041799 (-) 378 WP_173107813.1 single-stranded DNA-binding protein Machinery gene
  KH172YL63_RS20490 (KH172YL63_40340) - 4042071..4042511 (+) 441 WP_173107814.1 YwpF-like family protein -
  KH172YL63_RS20495 (KH172YL63_40350) sinR 4042632..4042934 (+) 303 WP_173107815.1 helix-turn-helix domain-containing protein Regulator
  KH172YL63_RS20500 (KH172YL63_40360) - 4042977..4043111 (-) 135 WP_232066218.1 anti-repressor SinI family protein -
  KH172YL63_RS20505 (KH172YL63_40380) - 4043831..4044094 (-) 264 WP_173107817.1 hypothetical protein -
  KH172YL63_RS20510 (KH172YL63_40390) fabZ 4044279..4044710 (-) 432 WP_034765205.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KH172YL63_RS20515 (KH172YL63_40400) - 4045039..4045317 (-) 279 WP_173107818.1 DNA-directed RNA polymerase subunit beta -
  KH172YL63_RS20520 (KH172YL63_40410) - 4045333..4046175 (-) 843 WP_173107819.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14142.01 Da        Isoelectric Point: 9.4046

>NTDB_id=79359 KH172YL63_RS20485 WP_173107813.1 4041422..4041799(-) (ssbB) [Bacillus sp. KH172YL63]
MINQVTLVGRLTKDPEARKTTEGKSVLSVTVAVNRPYKNQKGQVDTDFVLCTIWDRAAENTERYCRKGSIVGVTGRIQTR
YYDNDQGKRTYITEVIAENVRFLDNKPASTSAPETTKKEPIELPF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=79359 KH172YL63_RS20485 WP_173107813.1 4041422..4041799(-) (ssbB) [Bacillus sp. KH172YL63]
TTGATCAATCAAGTGACCCTGGTGGGGAGGCTGACCAAAGACCCGGAAGCAAGAAAAACGACGGAAGGAAAATCTGTACT
CAGTGTAACGGTCGCCGTTAACAGGCCTTACAAGAATCAAAAAGGCCAGGTGGATACGGACTTTGTCCTCTGTACGATTT
GGGACCGTGCCGCTGAAAATACGGAAAGGTACTGCCGGAAAGGTTCCATCGTCGGTGTAACCGGGCGCATCCAAACCCGT
TATTATGACAATGACCAAGGAAAGCGAACGTATATAACCGAAGTCATCGCTGAAAATGTCCGGTTCCTCGACAACAAGCC
TGCATCAACCTCAGCACCGGAAACGACGAAGAAAGAGCCGATCGAATTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

89.6

0.512
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

84.8

0.456
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.424
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.346

100

0.408
  ssb Latilactobacillus sakei subsp. sakei 23K

48.113

84.8

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

37.594

100

0.4
  ssbB/cilA Streptococcus pneumoniae D39

37.594

100

0.4
  ssbB/cilA Streptococcus pneumoniae R6

37.594

100

0.4
  ssbB/cilA Streptococcus mitis SK321

37.121

100

0.392
  ssbA Streptococcus mutans UA159

37.121

100

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

36.364

100

0.384

Multiple sequence alignment