Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KH172YL63_RS20495 Genome accession   NZ_AP022842
Coordinates   4042632..4042934 (+) Length   100 a.a.
NCBI ID   WP_173107815.1    Uniprot ID   A0A6F8TXJ7
Organism   Bacillus sp. KH172YL63     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4037632..4047934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS20475 (KH172YL63_40310) - 4038161..4040986 (+) 2826 WP_173107811.1 DEAD/DEAH box helicase -
  KH172YL63_RS20480 (KH172YL63_40320) - 4041222..4041395 (-) 174 WP_173107812.1 hypothetical protein -
  KH172YL63_RS20485 (KH172YL63_40330) ssbB 4041422..4041799 (-) 378 WP_173107813.1 single-stranded DNA-binding protein Machinery gene
  KH172YL63_RS20490 (KH172YL63_40340) - 4042071..4042511 (+) 441 WP_173107814.1 YwpF-like family protein -
  KH172YL63_RS20495 (KH172YL63_40350) sinR 4042632..4042934 (+) 303 WP_173107815.1 helix-turn-helix domain-containing protein Regulator
  KH172YL63_RS20500 (KH172YL63_40360) - 4042977..4043111 (-) 135 WP_232066218.1 anti-repressor SinI family protein -
  KH172YL63_RS20505 (KH172YL63_40380) - 4043831..4044094 (-) 264 WP_173107817.1 hypothetical protein -
  KH172YL63_RS20510 (KH172YL63_40390) fabZ 4044279..4044710 (-) 432 WP_034765205.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KH172YL63_RS20515 (KH172YL63_40400) - 4045039..4045317 (-) 279 WP_173107818.1 DNA-directed RNA polymerase subunit beta -
  KH172YL63_RS20520 (KH172YL63_40410) - 4045333..4046175 (-) 843 WP_173107819.1 flagellar hook-basal body protein -
  KH172YL63_RS20525 (KH172YL63_40420) - 4046235..4047074 (-) 840 WP_173107820.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11381.96 Da        Isoelectric Point: 5.2300

>NTDB_id=79360 KH172YL63_RS20495 WP_173107815.1 4042632..4042934(+) (sinR) [Bacillus sp. KH172YL63]
MIGERVKKYRNQKKMSMNELSEKAGIAKSYISSIERNLQKNPSIQFLEKVSAALGIGVDALLYDEPENQNIDGDWLKIAE
EAMDSGITKQQFREFIEANK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=79360 KH172YL63_RS20495 WP_173107815.1 4042632..4042934(+) (sinR) [Bacillus sp. KH172YL63]
TTGATTGGAGAGAGAGTAAAGAAGTATCGTAACCAAAAGAAAATGTCTATGAATGAGCTTTCTGAAAAAGCAGGCATTGC
CAAATCATATATCAGCTCTATTGAACGGAATCTCCAAAAAAACCCGTCGATTCAGTTTTTAGAGAAAGTATCCGCGGCTC
TCGGGATTGGCGTAGACGCCCTATTATATGATGAACCGGAAAATCAAAACATAGATGGAGACTGGTTAAAAATTGCTGAG
GAAGCCATGGACTCTGGTATCACAAAGCAGCAGTTCCGTGAATTCATCGAAGCCAATAAGTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-97)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TXJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

56.311

100

0.58

Multiple sequence alignment