Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PVK54_RS08400 | Genome accession | NZ_CP118312 |
| Coordinates | 1619146..1619565 (-) | Length | 139 a.a. |
| NCBI ID | WP_021340323.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain 20181688 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1614146..1624565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVK54_RS08340 (PVK54_08300) | - | 1614309..1614692 (+) | 384 | WP_003055660.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| PVK54_RS08345 (PVK54_08305) | - | 1615387..1615827 (-) | 441 | WP_228636957.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| PVK54_RS08350 (PVK54_08310) | - | 1616101..1616271 (-) | 171 | WP_164997036.1 | hypothetical protein | - |
| PVK54_RS08355 (PVK54_08315) | - | 1616268..1616774 (-) | 507 | WP_011054751.1 | DUF1642 domain-containing protein | - |
| PVK54_RS08360 (PVK54_08320) | - | 1616771..1616941 (-) | 171 | WP_011054752.1 | hypothetical protein | - |
| PVK54_RS08365 (PVK54_08325) | - | 1616938..1617342 (-) | 405 | WP_228636960.1 | YopX family protein | - |
| PVK54_RS08370 (PVK54_08330) | - | 1617352..1617621 (-) | 270 | WP_011054754.1 | hypothetical protein | - |
| PVK54_RS08375 (PVK54_08335) | - | 1617618..1617902 (-) | 285 | WP_020905119.1 | DUF3310 domain-containing protein | - |
| PVK54_RS08380 | - | 1617896..1618147 (-) | 252 | WP_032462267.1 | hypothetical protein | - |
| PVK54_RS08385 (PVK54_08340) | - | 1618144..1618500 (-) | 357 | WP_023078113.1 | hypothetical protein | - |
| PVK54_RS08390 (PVK54_08345) | - | 1618497..1618937 (-) | 441 | WP_011285574.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PVK54_RS08395 (PVK54_08350) | - | 1618937..1619140 (-) | 204 | WP_011106686.1 | hypothetical protein | - |
| PVK54_RS08400 (PVK54_08355) | ssbA | 1619146..1619565 (-) | 420 | WP_021340323.1 | single-stranded DNA-binding protein | Machinery gene |
| PVK54_RS08405 (PVK54_08360) | - | 1619558..1620232 (-) | 675 | WP_032462266.1 | ERF family protein | - |
| PVK54_RS08410 (PVK54_08365) | - | 1620233..1620715 (-) | 483 | WP_011018142.1 | siphovirus Gp157 family protein | - |
| PVK54_RS08415 (PVK54_08370) | - | 1620737..1620991 (-) | 255 | WP_011018143.1 | hypothetical protein | - |
| PVK54_RS08420 (PVK54_08375) | - | 1620972..1621325 (-) | 354 | WP_011285579.1 | hypothetical protein | - |
| PVK54_RS08425 (PVK54_08380) | - | 1621338..1621475 (-) | 138 | WP_011285580.1 | hypothetical protein | - |
| PVK54_RS08430 (PVK54_08385) | - | 1621466..1622248 (-) | 783 | WP_021340659.1 | ATP-binding protein | - |
| PVK54_RS08435 (PVK54_08390) | - | 1622235..1623038 (-) | 804 | WP_021340639.1 | DnaD domain protein | - |
| PVK54_RS08440 (PVK54_08395) | - | 1623154..1623597 (-) | 444 | WP_012560973.1 | hypothetical protein | - |
| PVK54_RS08445 (PVK54_08400) | - | 1623653..1624033 (+) | 381 | WP_000568478.1 | hypothetical protein | - |
| PVK54_RS08450 (PVK54_08405) | - | 1624023..1624295 (-) | 273 | WP_000370473.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15611.30 Da Isoelectric Point: 4.6702
>NTDB_id=791820 PVK54_RS08400 WP_021340323.1 1619146..1619565(-) (ssbA) [Streptococcus pyogenes strain 20181688]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESCNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESCNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=791820 PVK54_RS08400 WP_021340323.1 1619146..1619565(-) (ssbA) [Streptococcus pyogenes strain 20181688]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTTGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTTGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.857 |
100 |
0.691 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.647 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.885 |
100 |
0.439 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.165 |
100 |
0.432 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.769 |
74.82 |
0.417 |
| ssbA | Streptococcus mutans UA159 |
41.007 |
100 |
0.41 |
| ssb | Vibrio cholerae strain A1552 |
30.636 |
100 |
0.381 |