Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   PUW52_RS01265 Genome accession   NZ_CP118078
Coordinates   232068..232463 (+) Length   131 a.a.
NCBI ID   WP_003070740.1    Uniprot ID   A0AAD2SVP3
Organism   Streptococcus anginosus strain VSI16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 227068..237463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS01235 (PUW52_01235) - 227463..228767 (+) 1305 WP_024052598.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  PUW52_RS01240 (PUW52_01240) - 228945..229505 (+) 561 WP_024052599.1 folate family ECF transporter S component -
  PUW52_RS01245 (PUW52_01245) pepA 229568..230632 (-) 1065 WP_042754108.1 glutamyl aminopeptidase -
  PUW52_RS01250 (PUW52_01250) - 230752..231039 (+) 288 WP_024052601.1 DUF4651 domain-containing protein -
  PUW52_RS01255 (PUW52_01255) - 231036..231353 (+) 318 WP_024052602.1 thioredoxin family protein -
  PUW52_RS01260 (PUW52_01260) ytpR 231370..231996 (+) 627 WP_024052603.1 YtpR family tRNA-binding protein -
  PUW52_RS01265 (PUW52_01265) ssbB/cilA 232068..232463 (+) 396 WP_003070740.1 single-stranded DNA-binding protein Machinery gene
  PUW52_RS01270 (PUW52_01270) - 232880..233659 (+) 780 WP_024052604.1 InlB B-repeat-containing protein -
  PUW52_RS01275 (PUW52_01275) - 233697..234497 (-) 801 WP_024052605.1 LacI family DNA-binding transcriptional regulator -
  PUW52_RS01280 (PUW52_01280) - 234559..236262 (+) 1704 WP_024052606.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14715.64 Da        Isoelectric Point: 5.9381

>NTDB_id=789823 PUW52_RS01265 WP_003070740.1 232068..232463(+) (ssbB/cilA) [Streptococcus anginosus strain VSI16]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=789823 PUW52_RS01265 WP_003070740.1 232068..232463(+) (ssbB/cilA) [Streptococcus anginosus strain VSI16]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT
GGGGCAAATTAGCCGAAACTTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACCCGT
CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTGCTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA
ACGAGCTCTTCGTGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374