Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PT671_RS12325 Genome accession   NZ_CP118021
Coordinates   2488548..2488889 (+) Length   113 a.a.
NCBI ID   WP_003221780.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2483548..2493889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS12310 - 2486730..2487368 (+) 639 WP_003221786.1 class A sortase -
  PT671_RS12315 - 2487501..2487911 (-) 411 WP_003221785.1 YwpF-like family protein -
  PT671_RS12320 ywpG 2488088..2488471 (+) 384 WP_003221783.1 DynA interaction protein YwpG -
  PT671_RS12325 ssbB 2488548..2488889 (+) 342 WP_003221780.1 single-stranded DNA-binding protein SsbB Machinery gene
  PT671_RS12330 glcR 2489114..2489890 (+) 777 WP_003221778.1 transcriptional regulator GlcR -
  PT671_RS12335 - 2489896..2490753 (+) 858 WP_003221776.1 Cof-type HAD-IIB family hydrolase -
  PT671_RS12340 - 2490882..2493650 (-) 2769 WP_003221774.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12459.15 Da        Isoelectric Point: 7.8150

>NTDB_id=789161 PT671_RS12325 WP_003221780.1 2488548..2488889(+) (ssbB) [Bacillus spizizenii strain B-354]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVPVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=789161 PT671_RS12325 WP_003221780.1 2488548..2488889(+) (ssbB) [Bacillus spizizenii strain B-354]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTATATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTCCCGTCTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398