Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PUN35_RS17480 Genome accession   NZ_CP117986
Coordinates   3259640..3259981 (+) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3254640..3264981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS17440 rapD 3254771..3255835 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  PUN35_RS17445 fabZ 3256027..3256452 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PUN35_RS17450 mscL 3256525..3256920 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  PUN35_RS17455 - 3256968..3257804 (-) 837 WP_014481147.1 sensor histidine kinase -
  PUN35_RS22515 - 3257838..3257990 (+) 153 Protein_3398 prealbumin-like fold domain-containing protein -
  PUN35_RS17465 - 3258064..3258456 (+) 393 Protein_3399 class A sortase -
  PUN35_RS17470 - 3258596..3259006 (-) 411 WP_014481144.1 YwpF-like family protein -
  PUN35_RS17475 ywpG 3259181..3259563 (+) 383 Protein_3401 DynA interaction protein YwpG -
  PUN35_RS17480 ssbB 3259640..3259981 (+) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  PUN35_RS17485 glcR 3260205..3260981 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  PUN35_RS17490 ywpJ 3260987..3261844 (+) 858 WP_014481140.1 phosphatase YwpJ -
  PUN35_RS17495 - 3261970..3264738 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=788927 PUN35_RS17480 WP_014481141.1 3259640..3259981(+) (ssbB) [Bacillus sp. N3378-2at]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=788927 PUN35_RS17480 WP_014481141.1 3259640..3259981(+) (ssbB) [Bacillus sp. N3378-2at]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389