Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PSR14_RS11515 Genome accession   NZ_CP117702
Coordinates   2174546..2174881 (+) Length   111 a.a.
NCBI ID   WP_098487119.1    Uniprot ID   -
Organism   Bacillus sp. A01H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2169546..2179881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS11490 (PSR14_11510) - 2169825..2170571 (-) 747 WP_000499681.1 hypothetical protein -
  PSR14_RS11495 (PSR14_11515) - 2170681..2171328 (+) 648 WP_000165943.1 HD domain-containing protein -
  PSR14_RS11500 (PSR14_11520) - 2171325..2173220 (+) 1896 WP_000783206.1 ABC-F family ATP-binding cassette domain-containing protein -
  PSR14_RS11505 (PSR14_11525) - 2173296..2174027 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  PSR14_RS11510 (PSR14_11530) - 2174133..2174387 (+) 255 WP_000975123.1 DUF4318 domain-containing protein -
  PSR14_RS11515 (PSR14_11535) ssbA 2174546..2174881 (+) 336 WP_098487119.1 single-stranded DNA-binding protein Machinery gene
  PSR14_RS11520 (PSR14_11540) - 2174910..2175500 (-) 591 WP_000943173.1 TetR/AcrR family transcriptional regulator -
  PSR14_RS11525 (PSR14_11545) - 2175602..2176735 (-) 1134 WP_001066845.1 FAD-dependent monooxygenase -
  PSR14_RS11530 (PSR14_11550) - 2176994..2178121 (+) 1128 WP_000692572.1 conserved virulence factor C family protein -
  PSR14_RS11535 (PSR14_11555) - 2178125..2178508 (+) 384 WP_000634897.1 thiol-disulfide oxidoreductase DCC family protein -
  PSR14_RS11540 (PSR14_11560) - 2178592..2179026 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  PSR14_RS11545 (PSR14_11565) - 2179076..2179852 (+) 777 WP_406644211.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12698.52 Da        Isoelectric Point: 9.0842

>NTDB_id=787133 PSR14_RS11515 WP_098487119.1 2174546..2174881(+) (ssbA) [Bacillus sp. A01H]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRPEGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=787133 PSR14_RS11515 WP_098487119.1 2174546..2174881(+) (ssbA) [Bacillus sp. A01H]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATAACCTTTTTGGAGAGAAGGCC
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.336

96.396

0.505
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387