Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GsuE55_RS12680 Genome accession   NZ_AP022557
Coordinates   2547782..2548129 (-) Length   115 a.a.
NCBI ID   WP_209005376.1    Uniprot ID   A0A679FNV7
Organism   Geobacillus subterraneus strain E55-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2542782..2553129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS12660 (GsuE55_25520) - 2543957..2544736 (-) 780 WP_061912229.1 hypothetical protein -
  GsuE55_RS12665 (GsuE55_25530) - 2544771..2546114 (-) 1344 WP_172418710.1 peptidoglycan-binding protein -
  GsuE55_RS12670 (GsuE55_25540) - 2546294..2546779 (-) 486 WP_061912231.1 hypothetical protein -
  GsuE55_RS12675 (GsuE55_25550) - 2546988..2547395 (+) 408 WP_172418711.1 helix-turn-helix transcriptional regulator -
  GsuE55_RS12680 (GsuE55_25560) ssbB 2547782..2548129 (-) 348 WP_209005376.1 single-stranded DNA-binding protein Machinery gene
  GsuE55_RS12685 (GsuE55_25570) - 2548393..2548845 (+) 453 WP_172418713.1 YwpF-like family protein -
  GsuE55_RS12690 (GsuE55_25580) - 2549149..2549808 (-) 660 WP_051962599.1 class D sortase -
  GsuE55_RS12695 (GsuE55_25590) - 2549815..2550729 (-) 915 WP_153017119.1 processed acidic surface protein -
  GsuE55_RS12700 (GsuE55_25600) - 2551327..2552703 (-) 1377 WP_033842985.1 aspartate kinase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12829.60 Da        Isoelectric Point: 9.1364

>NTDB_id=78624 GsuE55_RS12680 WP_209005376.1 2547782..2548129(-) (ssbB) [Geobacillus subterraneus strain E55-1]
MINQVVLVGRLTKDPELRYTADGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANFCRKGSMVAVTGRIQTR
RYDNKDGQRVYVTEVVAQSVQFLHSGKQPEWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=78624 GsuE55_RS12680 WP_209005376.1 2547782..2548129(-) (ssbB) [Geobacillus subterraneus strain E55-1]
ATGATCAATCAAGTCGTGTTGGTCGGTCGATTGACGAAGGATCCGGAACTTCGCTATACGGCCGACGGCGCCGCTGTAGC
AACGGTTACGCTGGCAGTGGCAAGAAATTTCCGCAATGCGGAGGGAGGGATTGATGCCGACTTCGTTCCTTGTGTTTTAT
GGCGGAAAACAGCCGAGCATACCGCCAATTTCTGCCGAAAAGGCTCAATGGTGGCGGTGACCGGGCGAATTCAGACGCGC
CGCTACGACAATAAAGACGGTCAGCGCGTCTATGTCACCGAGGTGGTGGCGCAGTCCGTTCAATTTCTACACTCCGGCAA
ACAACCTGAATGGCCGGAGCACGTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679FNV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.961

89.565

0.609
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.346

90.435

0.6
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

91.304

0.565
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.148

93.913

0.452
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.982

99.13

0.426
  ssbB/cilA Streptococcus mitis SK321

42.982

99.13

0.426
  ssbA Streptococcus mutans UA159

44.444

93.913

0.417
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

90.435

0.374

Multiple sequence alignment