Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PRK74_RS10360 Genome accession   NZ_CP117421
Coordinates   1991278..1991613 (+) Length   111 a.a.
NCBI ID   WP_128266944.1    Uniprot ID   -
Organism   Bacillus cereus strain 2-6A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1986278..1996613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRK74_RS10335 (PRK74_10335) - 1986473..1987300 (-) 828 WP_128266943.1 hypothetical protein -
  PRK74_RS10340 (PRK74_10340) - 1987410..1988057 (+) 648 WP_000165966.1 HD domain-containing protein -
  PRK74_RS10345 (PRK74_10345) - 1988054..1989949 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  PRK74_RS10350 (PRK74_10350) - 1990025..1990756 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  PRK74_RS10355 (PRK74_10355) - 1990862..1991116 (+) 255 WP_000975131.1 DUF4318 domain-containing protein -
  PRK74_RS10360 (PRK74_10360) ssbA 1991278..1991613 (+) 336 WP_128266944.1 single-stranded DNA-binding protein Machinery gene
  PRK74_RS10365 (PRK74_10365) - 1991946..1992080 (+) 135 WP_000026685.1 Imm26 family immunity protein -
  PRK74_RS10370 (PRK74_10370) - 1992123..1992419 (+) 297 WP_000829715.1 hypothetical protein -
  PRK74_RS10375 (PRK74_10375) - 1992711..1993838 (+) 1128 WP_000692580.1 conserved virulence factor C family protein -
  PRK74_RS10380 (PRK74_10380) - 1993842..1994225 (+) 384 WP_000634887.1 thiol-disulfide oxidoreductase DCC family protein -
  PRK74_RS10385 (PRK74_10385) - 1994309..1994743 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  PRK74_RS10390 (PRK74_10390) - 1994793..1995569 (+) 777 WP_061139359.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12722.57 Da        Isoelectric Point: 9.7036

>NTDB_id=784724 PRK74_RS10360 WP_128266944.1 1991278..1991613(+) (ssbA) [Bacillus cereus strain 2-6A]
MINRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYNDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=784724 PRK74_RS10360 WP_128266944.1 1991278..1991613(+) (ssbA) [Bacillus cereus strain 2-6A]
ATGATAAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACAATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

95.495

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396