Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   PO908_RS01380 Genome accession   NZ_CP117042
Coordinates   250763..251158 (+) Length   131 a.a.
NCBI ID   WP_003026935.1    Uniprot ID   A0AAP6BPN1
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 245763..256158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS01350 (PO908_01350) - 246150..247454 (+) 1305 WP_394468009.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PO908_RS01355 (PO908_01355) - 247632..248192 (+) 561 WP_021001242.1 folate family ECF transporter S component -
  PO908_RS01360 (PO908_01360) pepA 248255..249319 (-) 1065 WP_021001243.1 glutamyl aminopeptidase -
  PO908_RS01365 (PO908_01365) - 249439..249726 (+) 288 WP_003026945.1 DUF4651 domain-containing protein -
  PO908_RS01370 (PO908_01370) - 249723..250040 (+) 318 WP_003026942.1 thioredoxin family protein -
  PO908_RS01375 (PO908_01375) ytpR 250057..250683 (+) 627 WP_003026939.1 YtpR family tRNA-binding protein -
  PO908_RS01380 (PO908_01380) ssbB/cilA 250763..251158 (+) 396 WP_003026935.1 single-stranded DNA-binding protein Machinery gene
  PO908_RS01385 (PO908_01385) - 251455..252441 (+) 987 WP_003026932.1 sugar ABC transporter substrate-binding protein -
  PO908_RS01390 (PO908_01390) - 252441..253754 (+) 1314 WP_394468010.1 sensor histidine kinase -
  PO908_RS01395 (PO908_01395) - 253747..254430 (+) 684 WP_003030916.1 response regulator transcription factor -
  PO908_RS01400 (PO908_01400) - 254427..255713 (+) 1287 WP_041783988.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14714.62 Da        Isoelectric Point: 5.9381

>NTDB_id=782224 PO908_RS01380 WP_003026935.1 250763..251158(+) (ssbB/cilA) [Streptococcus anginosus strain CGMH_KH1]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDNVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=782224 PO908_RS01380 WP_003026935.1 250763..251158(+) (ssbB/cilA) [Streptococcus anginosus strain CGMH_KH1]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACCCTTGCTGTCAATCGTCGCTACAAAGGGCAAAATGGCGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCTGAAACCTTAGCAAGTTATGCAAGTAAAGGTAGCTTGATTTCGCTAGATGGTGAACTTCGCACTCGC
CGCTATGAGAAGGACAATGTTACCCACTATGTTACAGAAGTACTTTGCAATGGCTTTCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCTGGTGCAGATTTGGCAGACTTGGTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssb Latilactobacillus sakei subsp. sakei 23K

43.22

90.076

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366