Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LYZ37_RS00185 Genome accession   NZ_CP117029
Coordinates   39559..40677 (+) Length   372 a.a.
NCBI ID   WP_272786032.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 34559..45677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS00165 (LYZ37_00165) rsmB 35504..36784 (-) 1281 WP_272786029.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LYZ37_RS00170 (LYZ37_00170) fmt 36857..37804 (-) 948 WP_272786030.1 methionyl-tRNA formyltransferase -
  LYZ37_RS00175 (LYZ37_00175) def 37832..38353 (-) 522 WP_004743629.1 peptide deformylase -
  LYZ37_RS00180 (LYZ37_00180) - 38530..39555 (+) 1026 WP_272786031.1 LysM peptidoglycan-binding domain-containing protein -
  LYZ37_RS00185 (LYZ37_00185) dprA 39559..40677 (+) 1119 WP_272786032.1 DNA-processing protein DprA Machinery gene
  LYZ37_RS00190 (LYZ37_00190) - 40680..41159 (+) 480 WP_038197518.1 DUF494 family protein -
  LYZ37_RS00195 (LYZ37_00195) - 41175..41759 (+) 585 WP_239852409.1 type I DNA topoisomerase -
  LYZ37_RS00200 (LYZ37_00200) - 41806..42939 (-) 1134 WP_272786033.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LYZ37_RS00205 (LYZ37_00205) purE 42943..43428 (-) 486 WP_069668053.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LYZ37_RS00210 (LYZ37_00210) - 43623..44180 (+) 558 WP_272786034.1 L-threonylcarbamoyladenylate synthase -
  LYZ37_RS00215 (LYZ37_00215) hemF 44202..45119 (+) 918 WP_195877313.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40095.84 Da        Isoelectric Point: 6.1702

>NTDB_id=782091 LYZ37_RS00185 WP_272786032.1 39559..40677(+) (dprA) [Vibrio tubiashii strain FP17]
MTNEELAAWLSLNFTPRVGPKTFSRLLAMDSPVNIVQSDLPALLALGLNAQQANYLKNRAAKEVEQCFEWQQQSAQHNIV
TKQESSYPALLEQAVGSPPILFVQGEVSGLSEPQIAMVGSRNASPEGLNIARSFARALVEQGLTVTSGLALGVDGYAHDG
ALQGGGRTLAVLGSGLETIYPTRHRELASRILDSGGALVSEFHPKAKPKADHFPRRNRIISGLSIGVLVVEAAEKSGSLI
TARYAIEQGRDVFAIPGSIHDSNARGCNLLIKQGACLVMRVQDIVDEIETLLRWSNSSKPPIQNELFEEIDSKEELPFPL
LLANVGSKAIPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=782091 LYZ37_RS00185 WP_272786032.1 39559..40677(+) (dprA) [Vibrio tubiashii strain FP17]
GTGACCAATGAAGAGCTCGCGGCATGGCTGTCGCTCAACTTTACCCCTAGAGTCGGTCCGAAAACCTTTTCTCGTCTGCT
CGCAATGGACTCACCAGTAAACATTGTTCAATCTGACCTTCCGGCGCTTTTAGCCCTTGGATTAAACGCACAACAGGCTA
ACTATCTAAAAAACCGAGCGGCGAAAGAGGTTGAGCAGTGCTTTGAGTGGCAACAACAATCTGCTCAACACAACATTGTC
ACTAAGCAAGAGAGCAGTTACCCGGCATTACTTGAACAGGCGGTAGGCTCTCCTCCGATTTTATTCGTTCAAGGAGAGGT
GAGCGGTTTGTCTGAACCTCAAATTGCGATGGTCGGTAGCCGCAATGCCAGTCCTGAAGGGCTTAATATCGCGCGAAGCT
TTGCTCGGGCTTTGGTTGAGCAAGGTCTGACGGTGACAAGTGGTTTGGCCCTTGGCGTGGATGGCTACGCCCATGATGGA
GCGTTGCAAGGAGGAGGACGTACACTCGCGGTTCTCGGCAGCGGCCTAGAAACTATTTACCCAACTAGACATCGTGAACT
TGCTAGCAGAATCCTTGATAGTGGAGGGGCGCTGGTTTCGGAGTTTCATCCTAAAGCGAAGCCTAAAGCCGATCATTTTC
CGCGCCGCAATCGAATTATCAGCGGCCTTTCTATTGGAGTGCTAGTGGTTGAAGCCGCAGAGAAAAGTGGTTCCTTGATT
ACGGCGCGCTATGCCATAGAGCAAGGGCGTGACGTGTTTGCTATTCCGGGTTCTATCCACGATTCAAATGCACGCGGTTG
TAACCTGTTGATTAAGCAAGGTGCGTGTTTGGTGATGAGAGTTCAGGACATAGTTGATGAAATAGAGACGCTTTTACGCT
GGTCTAATTCCAGTAAGCCACCGATTCAAAATGAACTTTTCGAGGAAATAGATAGTAAAGAAGAATTGCCATTTCCTCTG
CTGTTAGCTAACGTAGGAAGTAAGGCTATACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTGCAGGACGTCAT
GATGCAGCTCTTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(321-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.331

99.194

0.618
  dprA Vibrio cholerae strain A1552

59.677

100

0.597
  dprA Legionella pneumophila strain ERS1305867

45

96.774

0.435
  dprA Glaesserella parasuis strain SC1401

43.085

100

0.435
  dprA Neisseria gonorrhoeae MS11

36.946

100

0.403
  dprA Neisseria gonorrhoeae strain FA1090

36.7

100

0.401
  dprA Neisseria meningitidis strain C311

37.437

100

0.401
  dprA Neisseria meningitidis MC58

37.437

100

0.401
  dprA Haemophilus influenzae Rd KW20

42.286

94.086

0.398
  dprA Acinetobacter baumannii strain A118

41.543

90.591

0.376
  dprA Acinetobacter baumannii D1279779

41.543

90.591

0.376
  dprA Acinetobacter baylyi ADP1

41.641

88.441

0.368