Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssbB   Type   Machinery gene
Locus tag   PPM45_RS17960 Genome accession   NZ_CP116870
Coordinates   3505994..3506335 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 3500994..3511335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS17945 hepAB 3501237..3504005 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  PPM45_RS17950 ywpJ 3504131..3504988 (-) 858 WP_003242946.1 phosphatase YwpJ -
  PPM45_RS17955 glcR 3504994..3505770 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  PPM45_RS17960 ssbB 3505994..3506335 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  PPM45_RS17965 ywpG 3506412..3506795 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  PPM45_RS17970 ywpF 3506970..3507380 (+) 411 WP_003227794.1 YwpF-like family protein -
  PPM45_RS17975 - 3507520..3507912 (-) 393 Protein_3481 class A sortase -
  PPM45_RS20590 - 3507986..3508138 (-) 153 Protein_3482 prealbumin-like fold domain-containing protein -
  PPM45_RS17985 ywpD 3508172..3509008 (+) 837 WP_003227787.1 sensor histidine kinase -
  PPM45_RS17990 mscL 3509055..3509447 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  PPM45_RS17995 fabZ 3509520..3509945 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PPM45_RS18000 rapD 3510137..3511201 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence


Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=780748 PPM45_RS17960 WP_003227798.1 3505994..3506335(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Master_strain]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=780748 PPM45_RS17960 WP_003227798.1 3505994..3506335(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 3VDY

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1

  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602

  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558

  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434

  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425

  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425

  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416

  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416

  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416

  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416

  ssbA Streptococcus mutans UA159

44.34

93.805

0.416

  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389