Detailed information
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | PPM45_RS17960 | Genome accession | NZ_CP116870 |
| Coordinates | 3505994..3506335 (-) | Length | 113 a.a. |
| NCBI ID | WP_003227798.1 | Uniprot ID | C0SPB6 |
| Organism | Bacillus subtilis subsp. subtilis strain Master_strain | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3500994..3511335
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPM45_RS17945 | hepAB | 3501237..3504005 (+) | 2769 | WP_003227803.1 | DEAD/DEAH box helicase | - |
| PPM45_RS17950 | ywpJ | 3504131..3504988 (-) | 858 | WP_003242946.1 | phosphatase YwpJ | - |
| PPM45_RS17955 | glcR | 3504994..3505770 (-) | 777 | WP_003244075.1 | transcriptional regulator GlcR | - |
| PPM45_RS17960 | ssbB | 3505994..3506335 (-) | 342 | WP_003227798.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| PPM45_RS17965 | ywpG | 3506412..3506795 (-) | 384 | WP_003227796.1 | DynA interaction protein YwpG | - |
| PPM45_RS17970 | ywpF | 3506970..3507380 (+) | 411 | WP_003227794.1 | YwpF-like family protein | - |
| PPM45_RS17975 | - | 3507520..3507912 (-) | 393 | Protein_3481 | class A sortase | - |
| PPM45_RS20590 | - | 3507986..3508138 (-) | 153 | Protein_3482 | prealbumin-like fold domain-containing protein | - |
| PPM45_RS17985 | ywpD | 3508172..3509008 (+) | 837 | WP_003227787.1 | sensor histidine kinase | - |
| PPM45_RS17990 | mscL | 3509055..3509447 (-) | 393 | WP_003242893.1 | large conductance mechanosensitive channel protein MscL | - |
| PPM45_RS17995 | fabZ | 3509520..3509945 (-) | 426 | WP_003221796.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| PPM45_RS18000 | rapD | 3510137..3511201 (+) | 1065 | WP_003227782.1 | aspartate phosphatase RapD | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12520.15 Da Isoelectric Point: 6.9498
>NTDB_id=780748 PPM45_RS17960 WP_003227798.1 3505994..3506335(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Master_strain]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=780748 PPM45_RS17960 WP_003227798.1 3505994..3506335(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
93.805 |
0.602 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.434 |
93.805 |
0.558 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.519 |
95.575 |
0.416 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.519 |
95.575 |
0.416 |
| ssbA | Streptococcus mutans UA159 |
44.34 |
93.805 |
0.416 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.905 |
92.92 |
0.389 |