Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PPM30_RS17130 Genome accession   NZ_CP116868
Coordinates   3289300..3289641 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3284300..3294641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS17115 hepAB 3284543..3287311 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  PPM30_RS17120 ywpJ 3287437..3288294 (-) 858 WP_003242946.1 phosphatase YwpJ -
  PPM30_RS17125 glcR 3288300..3289076 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  PPM30_RS17130 ssbB 3289300..3289641 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  PPM30_RS17135 ywpG 3289718..3290101 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  PPM30_RS17140 ywpF 3290276..3290686 (+) 411 WP_003227794.1 YwpF-like family protein -
  PPM30_RS17145 - 3290826..3291218 (-) 393 Protein_3314 class A sortase -
  PPM30_RS19735 - 3291292..3291444 (-) 153 Protein_3315 prealbumin-like fold domain-containing protein -
  PPM30_RS17150 ywpD 3291478..3292314 (+) 837 WP_003227787.1 sensor histidine kinase -
  PPM30_RS17155 mscL 3292361..3292753 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  PPM30_RS17160 fabZ 3292826..3293251 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PPM30_RS17165 rapD 3293443..3294507 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=780579 PPM30_RS17130 WP_003227798.1 3289300..3289641(-) (ssbB) [Bacillus subtilis subsp. subtilis strain MGP003]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=780579 PPM30_RS17130 WP_003227798.1 3289300..3289641(-) (ssbB) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389