Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PNF29_RS02555 Genome accession   NZ_CP116773
Coordinates   478225..478566 (+) Length   113 a.a.
NCBI ID   WP_017696582.1    Uniprot ID   A0AAX3RQL5
Organism   Bacillus subtilis strain SRCM125727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 473225..483566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS02515 (PNF29_02515) fabZ 473278..473703 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PNF29_RS02520 (PNF29_02520) mscL 473776..474171 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  PNF29_RS02525 (PNF29_02525) ywpD 474219..475055 (-) 837 WP_250619934.1 sensor histidine kinase -
  PNF29_RS21885 - 475089..475241 (+) 153 Protein_503 prealbumin-like fold domain-containing protein -
  PNF29_RS02535 (PNF29_02535) - 475315..475779 (+) 465 Protein_504 class A sortase -
  PNF29_RS02540 (PNF29_02540) - 475781..477028 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  PNF29_RS02545 (PNF29_02545) ywpF 477180..477590 (-) 411 WP_003227794.1 YwpF-like family protein -
  PNF29_RS02550 (PNF29_02550) ywpG 477765..478148 (+) 384 WP_014478204.1 DynA interaction protein YwpG -
  PNF29_RS02555 (PNF29_02555) ssbB 478225..478566 (+) 342 WP_017696582.1 single-stranded DNA-binding protein SsbB Machinery gene
  PNF29_RS02560 (PNF29_02560) glcR 478791..479567 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  PNF29_RS02565 (PNF29_02565) ywpJ 479573..480430 (+) 858 WP_272515918.1 phosphatase YwpJ -
  PNF29_RS02570 (PNF29_02570) hepAB 480556..483324 (-) 2769 WP_272515919.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.12 Da        Isoelectric Point: 8.4694

>NTDB_id=780081 PNF29_RS02555 WP_017696582.1 478225..478566(+) (ssbB) [Bacillus subtilis strain SRCM125727]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTQVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=780081 PNF29_RS02555 WP_017696582.1 478225..478566(+) (ssbB) [Bacillus subtilis strain SRCM125727]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACACAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

93.805

0.416
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae D39

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae R6

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis SK321

43.396

93.805

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381