Detailed information NTG0779747

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: QYM42_RS11560
• Genome accession: NZ_CP129526
• Coordinates: 2317034..2317303 (-)
• Length: 89 a.a.
• NCBI ID: WP_021721869.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain ZZ-2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2312034..2322303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM42_RS11520 (QYM42_11520)	-	2312569..2313378 (-)	810	WP_014570791.1	metal ABC transporter permease	-
QYM42_RS11525 (QYM42_11525)	-	2313371..2314108 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
QYM42_RS11530 (QYM42_11530)	-	2314285..2315127 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
QYM42_RS11535 (QYM42_11535)	-	2315124..2315561 (-)	438	WP_201248645.1	zinc-dependent MarR family transcriptional regulator	-
QYM42_RS11540 (QYM42_11540)	comGG	2315643..2315927 (-)	285	WP_025017139.1	competence type IV pilus minor pilin ComGG	Machinery gene
QYM42_RS11545 (QYM42_11545)	comGF	2315966..2316412 (-)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
QYM42_RS11550 (QYM42_11550)	comGE	2316375..2316671 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
QYM42_RS11555 (QYM42_11555)	comGD	2316643..2317059 (-)	417	WP_032941843.1	competence type IV pilus minor pilin ComGD	Machinery gene
QYM42_RS11560 (QYM42_11560)	comGC	2317034..2317303 (-)	270	WP_021721869.1	competence type IV pilus major pilin ComGC	Machinery gene
QYM42_RS11570 (QYM42_11570)	-	2317797..2317997 (-)	201	WP_058203534.1	cold-shock protein	-
QYM42_RS11575 (QYM42_11575)	-	2319243..2319686 (-)	444	WP_301675256.1	type II toxin-antitoxin system PemK/MazF family toxin	-
QYM42_RS11580 (QYM42_11580)	-	2319713..2320525 (-)	813	WP_301675257.1	DUF3800 domain-containing protein	-
QYM42_RS11585 (QYM42_11585)	-	2320638..2320814 (-)	177	WP_301675258.1	hypothetical protein	-
QYM42_RS11590 (QYM42_11590)	-	2320893..2321171 (-)	279	WP_301675259.1	hypothetical protein	-
QYM42_RS11595 (QYM42_11595)	-	2321253..2322032 (-)	780	WP_301675260.1	peptidoglycan amidohydrolase family protein	-

Sequence

Protein

• Length: 89 a.a.
• Molecular weight: 10127.55 Da
• Isoelectric Point: 4.2950

>NTDB_id=779747 QYM42_RS11560 WP_021721869.1 2317034..2317303(-) (comGC) [Lactococcus lactis strain ZZ-2]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPTLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide

• Length: 270 bp

>NTDB_id=779747 QYM42_RS11560 WP_021721869.1 2317034..2317303(-) (comGC) [Lactococcus lactis strain ZZ-2]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTGAAAGTAGTAGAAAGTCAAGCCCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	88	84.27	0.742
comGC	Streptococcus gordonii str. Challis substr. CH1	58.824	95.506	0.562
comGC/cglC	Streptococcus pneumoniae Rx1	53.933	100	0.539
comGC/cglC	Streptococcus pneumoniae D39	53.933	100	0.539
comGC/cglC	Streptococcus pneumoniae R6	53.933	100	0.539
comGC/cglC	Streptococcus pneumoniae TIGR4	53.933	100	0.539
comGC	Streptococcus suis isolate S10	60.274	82.022	0.494
comGC/cglC	Streptococcus mitis SK321	53.947	85.393	0.461
comGC	Streptococcus mutans UA140	53.425	82.022	0.438
comGC	Streptococcus mutans UA159	53.425	82.022	0.438
comGC/cglC	Streptococcus mitis NCTC 12261	56.25	71.91	0.404