Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QYM42_RS11545 Genome accession   NZ_CP129526
Coordinates   2315966..2316412 (-) Length   148 a.a.
NCBI ID   WP_029344525.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2310966..2321412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS11510 (QYM42_11510) - 2311083..2311460 (-) 378 WP_033900715.1 pyridoxamine 5'-phosphate oxidase family protein -
  QYM42_RS11515 (QYM42_11515) - 2311665..2312531 (+) 867 WP_251899925.1 RluA family pseudouridine synthase -
  QYM42_RS11520 (QYM42_11520) - 2312569..2313378 (-) 810 WP_014570791.1 metal ABC transporter permease -
  QYM42_RS11525 (QYM42_11525) - 2313371..2314108 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  QYM42_RS11530 (QYM42_11530) - 2314285..2315127 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  QYM42_RS11535 (QYM42_11535) - 2315124..2315561 (-) 438 WP_201248645.1 zinc-dependent MarR family transcriptional regulator -
  QYM42_RS11540 (QYM42_11540) comGG 2315643..2315927 (-) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  QYM42_RS11545 (QYM42_11545) comGF 2315966..2316412 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYM42_RS11550 (QYM42_11550) comGE 2316375..2316671 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  QYM42_RS11555 (QYM42_11555) comGD 2316643..2317059 (-) 417 WP_032941843.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYM42_RS11560 (QYM42_11560) comGC 2317034..2317303 (-) 270 WP_021721869.1 competence type IV pilus major pilin ComGC Machinery gene
  QYM42_RS11570 (QYM42_11570) - 2317797..2317997 (-) 201 WP_058203534.1 cold-shock protein -
  QYM42_RS11575 (QYM42_11575) - 2319243..2319686 (-) 444 WP_301675256.1 type II toxin-antitoxin system PemK/MazF family toxin -
  QYM42_RS11580 (QYM42_11580) - 2319713..2320525 (-) 813 WP_301675257.1 DUF3800 domain-containing protein -
  QYM42_RS11585 (QYM42_11585) - 2320638..2320814 (-) 177 WP_301675258.1 hypothetical protein -
  QYM42_RS11590 (QYM42_11590) - 2320893..2321171 (-) 279 WP_301675259.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17111.91 Da        Isoelectric Point: 8.6780

>NTDB_id=779744 QYM42_RS11545 WP_029344525.1 2315966..2316412(-) (comGF) [Lactococcus lactis strain ZZ-2]
MERKLCDLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide


Download         Length: 447 bp        

>NTDB_id=779744 QYM42_RS11545 WP_029344525.1 2315966..2316412(-) (comGF) [Lactococcus lactis strain ZZ-2]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(48-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Lactococcus lactis subsp. cremoris KW2

76.259

93.919

0.716
  comGF Streptococcus mutans UA140

48.227

95.27

0.459
  comGF Streptococcus mutans UA159

47.518

95.27

0.453
  comGF/cglF Streptococcus mitis SK321

43.066

92.568

0.399
  comGF/cglF Streptococcus pneumoniae Rx1

40.426

95.27

0.385
  comGF/cglF Streptococcus pneumoniae D39

40.426

95.27

0.385
  comGF/cglF Streptococcus pneumoniae R6

40.426

95.27

0.385
  comGF/cglF Streptococcus pneumoniae TIGR4

40.426

95.27

0.385
  comGF/cglF Streptococcus mitis NCTC 12261

41.606

92.568

0.385