Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PHA78_RS11055 Genome accession   NZ_CP116604
Coordinates   2266895..2267311 (-) Length   138 a.a.
NCBI ID   WP_272158013.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2234808..2282735 2266895..2267311 within 0


Gene organization within MGE regions


Location: 2234808..2282735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS10845 - 2234808..2235299 (-) 492 WP_222357305.1 adenylyltransferase/cytidyltransferase family protein -
  PHA78_RS10850 clpC 2235418..2237871 (-) 2454 WP_272158168.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  PHA78_RS10855 - 2237875..2238333 (-) 459 WP_024418693.1 CtsR family transcriptional regulator -
  PHA78_RS10860 - 2238609..2238953 (+) 345 WP_029177107.1 thioredoxin domain-containing protein -
  PHA78_RS10865 - 2238947..2239648 (+) 702 WP_257059716.1 GNAT family acetyltransferase -
  PHA78_RS10870 tsf 2239979..2241019 (-) 1041 WP_099806551.1 translation elongation factor Ts -
  PHA78_RS10875 rpsB 2241272..2242048 (-) 777 WP_014637198.1 30S ribosomal protein S2 -
  PHA78_RS10885 - 2242956..2243180 (+) 225 WP_024398726.1 helix-turn-helix transcriptional regulator -
  PHA78_RS10890 - 2243324..2244043 (-) 720 WP_272158170.1 CHAP domain-containing protein -
  PHA78_RS10895 - 2244131..2244373 (-) 243 WP_024390532.1 phage holin -
  PHA78_RS10900 - 2244379..2244657 (-) 279 WP_029744331.1 hypothetical protein -
  PHA78_RS10905 - 2244661..2244816 (-) 156 WP_153308875.1 hypothetical protein -
  PHA78_RS10910 - 2244839..2245273 (-) 435 WP_272158171.1 DUF1366 domain-containing protein -
  PHA78_RS10915 - 2245286..2247295 (-) 2010 WP_272158172.1 DUF859 family phage minor structural protein -
  PHA78_RS10920 - 2247315..2250716 (-) 3402 WP_272158174.1 phage tail spike protein -
  PHA78_RS10925 - 2250713..2251390 (-) 678 WP_029188014.1 phage tail domain-containing protein -
  PHA78_RS10930 - 2251448..2254852 (-) 3405 WP_272158175.1 phage tail tape measure protein -
  PHA78_RS10935 - 2254865..2254999 (-) 135 WP_257213233.1 hypothetical protein -
  PHA78_RS10940 - 2255071..2255403 (-) 333 WP_029178006.1 hypothetical protein -
  PHA78_RS10945 - 2255416..2256006 (-) 591 WP_029178007.1 hypothetical protein -
  PHA78_RS10950 - 2256017..2256439 (-) 423 WP_029176422.1 hypothetical protein -
  PHA78_RS10955 - 2256444..2256815 (-) 372 WP_105148950.1 hypothetical protein -
  PHA78_RS10960 - 2256778..2257155 (-) 378 WP_105148951.1 phage head-tail adapter protein -
  PHA78_RS10965 - 2257148..2257447 (-) 300 WP_029178009.1 phage gp6-like head-tail connector protein -
  PHA78_RS10970 - 2257462..2257752 (-) 291 WP_029943528.1 HeH/LEM domain-containing protein -
  PHA78_RS10975 - 2257772..2258962 (-) 1191 WP_272158178.1 phage major capsid protein -
  PHA78_RS10980 - 2258968..2259657 (-) 690 WP_029178012.1 head maturation protease, ClpP-related -
  PHA78_RS10985 - 2259635..2260894 (-) 1260 WP_029176417.1 phage portal protein -
  PHA78_RS10990 - 2260924..2261175 (-) 252 WP_024414941.1 hypothetical protein -
  PHA78_RS10995 - 2261185..2262837 (-) 1653 WP_029178013.1 terminase TerL endonuclease subunit -
  PHA78_RS11000 - 2262821..2263168 (-) 348 WP_024406265.1 hypothetical protein -
  PHA78_RS11005 - 2263290..2263514 (-) 225 WP_228381580.1 HNH endonuclease -
  PHA78_RS11010 - 2263616..2263906 (-) 291 WP_029176413.1 hypothetical protein -
  PHA78_RS11015 - 2264072..2264647 (-) 576 WP_024388816.1 tyrosine-type recombinase/integrase -
  PHA78_RS11020 - 2264825..2265289 (-) 465 WP_029176412.1 hypothetical protein -
  PHA78_RS11025 - 2265261..2265494 (-) 234 WP_029176411.1 hypothetical protein -
  PHA78_RS11030 - 2265463..2265603 (-) 141 WP_153308587.1 hypothetical protein -
  PHA78_RS11035 - 2265600..2265851 (-) 252 WP_222296894.1 hypothetical protein -
  PHA78_RS11040 - 2265848..2266114 (-) 267 WP_051178035.1 hypothetical protein -
  PHA78_RS11045 - 2266104..2266490 (-) 387 WP_024419299.1 hypothetical protein -
  PHA78_RS11050 - 2266499..2266885 (-) 387 WP_024376884.1 hypothetical protein -
  PHA78_RS11055 ssb 2266895..2267311 (-) 417 WP_272158013.1 single-stranded DNA-binding protein Machinery gene
  PHA78_RS11060 - 2267575..2267796 (-) 222 WP_029188048.1 hypothetical protein -
  PHA78_RS11065 - 2267789..2268163 (-) 375 WP_105202639.1 YopX family protein -
  PHA78_RS11070 - 2268303..2268788 (-) 486 WP_029188050.1 DUF1642 domain-containing protein -
  PHA78_RS11075 - 2268801..2269097 (-) 297 WP_029178019.1 hypothetical protein -
  PHA78_RS11080 - 2269116..2269277 (-) 162 WP_153309547.1 hypothetical protein -
  PHA78_RS11085 - 2269279..2270301 (-) 1023 WP_272158020.1 DNA cytosine methyltransferase -
  PHA78_RS11090 - 2270288..2270482 (-) 195 WP_272158021.1 hypothetical protein -
  PHA78_RS11095 - 2270469..2270906 (-) 438 WP_171997649.1 hypothetical protein -
  PHA78_RS11100 - 2270971..2271138 (-) 168 WP_153309147.1 hypothetical protein -
  PHA78_RS11105 - 2271138..2271329 (-) 192 WP_099807271.1 hypothetical protein -
  PHA78_RS11110 - 2271316..2272293 (-) 978 WP_172034491.1 phage replisome organizer N-terminal domain-containing protein -
  PHA78_RS11115 - 2272295..2272441 (-) 147 WP_161496873.1 hypothetical protein -
  PHA78_RS11120 - 2272444..2272698 (-) 255 WP_029172957.1 hypothetical protein -
  PHA78_RS11125 - 2272700..2272888 (-) 189 WP_029172958.1 hypothetical protein -
  PHA78_RS11130 - 2272885..2273169 (-) 285 WP_029172959.1 hypothetical protein -
  PHA78_RS11135 - 2273212..2273928 (-) 717 WP_272158180.1 phage antirepressor KilAC domain-containing protein -
  PHA78_RS11140 - 2273992..2274423 (+) 432 WP_272158182.1 hypothetical protein -
  PHA78_RS11145 - 2274576..2274710 (-) 135 WP_261292008.1 hypothetical protein -
  PHA78_RS11150 - 2274703..2274900 (-) 198 WP_024412305.1 hypothetical protein -
  PHA78_RS11155 - 2274887..2275042 (-) 156 WP_153309449.1 hypothetical protein -
  PHA78_RS11160 - 2275113..2275589 (+) 477 WP_228381533.1 hypothetical protein -
  PHA78_RS11165 - 2275572..2275736 (-) 165 WP_099872423.1 hypothetical protein -
  PHA78_RS11170 - 2275820..2276023 (+) 204 WP_024376899.1 hypothetical protein -
  PHA78_RS11175 - 2276035..2276235 (-) 201 WP_029172962.1 hypothetical protein -
  PHA78_RS11180 - 2276303..2277025 (+) 723 WP_272158184.1 hypothetical protein -
  PHA78_RS11185 - 2277018..2277410 (-) 393 WP_272158569.1 hypothetical protein -
  PHA78_RS11190 - 2277472..2277678 (-) 207 WP_024399172.1 helix-turn-helix transcriptional regulator -
  PHA78_RS11195 - 2277919..2278497 (-) 579 WP_029178224.1 hypothetical protein -
  PHA78_RS11200 - 2278657..2278791 (-) 135 WP_272158185.1 hypothetical protein -
  PHA78_RS11205 - 2278978..2279727 (+) 750 WP_272158186.1 S24 family peptidase -
  PHA78_RS11210 - 2279741..2280388 (+) 648 WP_272158187.1 type II toxin-antitoxin system PemK/MazF family toxin -
  PHA78_RS11215 - 2280798..2281400 (+) 603 WP_222296883.1 CD20-like domain-containing protein -
  PHA78_RS11220 - 2281665..2282735 (+) 1071 WP_172093305.1 site-specific integrase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15788.71 Da        Isoelectric Point: 4.9059

>NTDB_id=778789 PHA78_RS11055 WP_272158013.1 2266895..2267311(-) (ssb) [Streptococcus sp. HN38]
MINNVVLVGRLTRDVELRYTPSNQAVATFTLAVNRNFKNQSTGEREADFINCVMWRQQAENLANWTKKGHLIAITGRIQT
RSYENQQGQRVYVTEVVAESFQLLEKRDNTANYSSIEEQMPPGMSGQLMDITDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=778789 PHA78_RS11055 WP_272158013.1 2266895..2267311(-) (ssb) [Streptococcus sp. HN38]
ATGATCAACAATGTTGTATTGGTCGGTAGATTGACGAGGGACGTAGAGCTACGTTATACACCGTCTAATCAAGCCGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAATCGACAGGAGAGCGGGAAGCTGACTTTATTAATTGTGTGA
TGTGGCGTCAGCAGGCCGAAAATCTGGCTAATTGGACCAAGAAAGGTCATCTGATTGCTATTACAGGACGAATCCAGACC
AGAAGCTATGAAAATCAGCAAGGGCAACGGGTCTATGTGACAGAGGTAGTTGCTGAGAGCTTCCAGTTATTGGAAAAGCG
TGATAATACGGCAAATTATTCAAGCATCGAAGAGCAGATGCCACCAGGGATGAGCGGTCAGCTGATGGATATTACAGATG
ACGACTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.216

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.023

100

0.652
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.39

100

0.464
  ssbB/cilA Streptococcus pneumoniae Rx1

44.681

100

0.457
  ssbB/cilA Streptococcus mitis NCTC 12261

44.681

100

0.457
  ssbB/cilA Streptococcus pneumoniae D39

44.681

100

0.457
  ssbB/cilA Streptococcus pneumoniae R6

44.681

100

0.457
  ssbB/cilA Streptococcus mitis SK321

44.681

100

0.457
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.009

77.536

0.442
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.153

80.435

0.428
  ssbA Streptococcus mutans UA159

47.748

80.435

0.384
  ssbB Lactococcus lactis subsp. cremoris KW2

45.455

79.71

0.362