Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PIB33_RS19815 Genome accession   NZ_CP116391
Coordinates   3756304..3756645 (-) Length   113 a.a.
NCBI ID   WP_029726038.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3751304..3761645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS19800 (PIB33_19800) hepAB 3751546..3754314 (+) 2769 WP_015714840.1 DEAD/DEAH box helicase -
  PIB33_RS19805 (PIB33_19805) ywpJ 3754440..3755297 (-) 858 WP_032722672.1 phosphatase YwpJ -
  PIB33_RS19810 (PIB33_19810) glcR 3755303..3756079 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  PIB33_RS19815 (PIB33_19815) ssbB 3756304..3756645 (-) 342 WP_029726038.1 single-stranded DNA-binding protein SsbB Machinery gene
  PIB33_RS19820 (PIB33_19820) ywpG 3756722..3757105 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  PIB33_RS19825 (PIB33_19825) ywpF 3757280..3757690 (+) 411 WP_003227794.1 YwpF-like family protein -
  PIB33_RS19830 (PIB33_19830) - 3757830..3758222 (-) 393 Protein_3848 class A sortase -
  PIB33_RS22310 - 3758296..3758448 (-) 153 Protein_3849 prealbumin-like fold domain-containing protein -
  PIB33_RS19840 (PIB33_19840) ywpD 3758482..3759318 (+) 837 WP_032722844.1 sensor histidine kinase -
  PIB33_RS19845 (PIB33_19845) mscL 3759366..3759761 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  PIB33_RS19850 (PIB33_19850) fabZ 3759833..3760258 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PIB33_RS19855 (PIB33_19855) rapD 3760450..3761514 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12471.12 Da        Isoelectric Point: 7.8468

>NTDB_id=777052 PIB33_RS19815 WP_029726038.1 3756304..3756645(-) (ssbB) [Bacillus subtilis strain GXD-20]
MFNHVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=777052 PIB33_RS19815 WP_029726038.1 3756304..3756645(-) (ssbB) [Bacillus subtilis strain GXD-20]
ATGTTCAATCATGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACACGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389