Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PJ259_RS11720 | Genome accession | NZ_CP116340 |
| Coordinates | 2532412..2532849 (+) | Length | 145 a.a. |
| NCBI ID | WP_271652933.1 | Uniprot ID | A0AAX3KRW2 |
| Organism | Pseudomonas sp. JBR1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2527412..2537849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PJ259_RS11700 (PJ259_11700) | coaE | 2527597..2528208 (-) | 612 | WP_271652929.1 | dephospho-CoA kinase | - |
| PJ259_RS11705 (PJ259_11705) | pilD | 2528205..2529077 (-) | 873 | WP_271652930.1 | A24 family peptidase | Machinery gene |
| PJ259_RS11710 (PJ259_11710) | pilC | 2529077..2530294 (-) | 1218 | WP_271652931.1 | type II secretion system F family protein | Machinery gene |
| PJ259_RS11715 (PJ259_11715) | pilB | 2530505..2532199 (-) | 1695 | WP_271652932.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PJ259_RS11720 (PJ259_11720) | pilA | 2532412..2532849 (+) | 438 | WP_271652933.1 | pilin | Machinery gene |
| PJ259_RS11725 (PJ259_11725) | - | 2532892..2534346 (+) | 1455 | WP_271652934.1 | O-antigen ligase family protein | - |
| PJ259_RS11730 (PJ259_11730) | - | 2534664..2535662 (-) | 999 | WP_271652935.1 | SDR family oxidoreductase | - |
| PJ259_RS11740 (PJ259_11740) | cyoA | 2536436..2537359 (+) | 924 | WP_059316077.1 | ubiquinol oxidase subunit II | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14634.77 Da Isoelectric Point: 8.4799
>NTDB_id=776681 PJ259_RS11720 WP_271652933.1 2532412..2532849(+) (pilA) [Pseudomonas sp. JBR1]
MKAQKGFTLIELMIVVAIIGILAAIAIPAYQDYVAKSQVTSGLAEITGAKTAYETAVNEGQATGYYTNANMGLAGSTNRC
GTIAVNAPTAGASATALTCTLTGNPVVNGAVIQLGRTTAGAWTCNIASRPTGWKASFLPSACTAS
MKAQKGFTLIELMIVVAIIGILAAIAIPAYQDYVAKSQVTSGLAEITGAKTAYETAVNEGQATGYYTNANMGLAGSTNRC
GTIAVNAPTAGASATALTCTLTGNPVVNGAVIQLGRTTAGAWTCNIASRPTGWKASFLPSACTAS
Nucleotide
Download Length: 438 bp
>NTDB_id=776681 PJ259_RS11720 WP_271652933.1 2532412..2532849(+) (pilA) [Pseudomonas sp. JBR1]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTAGTGGCGATCATTGGTATTTTGGCGGCGATTGCGAT
TCCGGCTTATCAGGATTATGTCGCGAAAAGCCAGGTGACTAGTGGTTTAGCAGAAATTACAGGCGCTAAAACCGCCTATG
AAACTGCCGTAAATGAAGGACAGGCCACCGGGTACTATACCAATGCAAATATGGGCCTAGCAGGCTCTACCAATCGCTGC
GGCACCATTGCGGTAAATGCTCCGACTGCAGGGGCATCCGCTACGGCGCTGACCTGTACTCTCACAGGTAATCCTGTTGT
AAATGGAGCAGTCATTCAGCTCGGGCGTACAACCGCTGGCGCTTGGACTTGTAATATAGCTTCTCGACCTACCGGCTGGA
AGGCCTCGTTCCTGCCCAGCGCCTGCACCGCCAGCTAA
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTAGTGGCGATCATTGGTATTTTGGCGGCGATTGCGAT
TCCGGCTTATCAGGATTATGTCGCGAAAAGCCAGGTGACTAGTGGTTTAGCAGAAATTACAGGCGCTAAAACCGCCTATG
AAACTGCCGTAAATGAAGGACAGGCCACCGGGTACTATACCAATGCAAATATGGGCCTAGCAGGCTCTACCAATCGCTGC
GGCACCATTGCGGTAAATGCTCCGACTGCAGGGGCATCCGCTACGGCGCTGACCTGTACTCTCACAGGTAATCCTGTTGT
AAATGGAGCAGTCATTCAGCTCGGGCGTACAACCGCTGGCGCTTGGACTTGTAATATAGCTTCTCGACCTACCGGCTGGA
AGGCCTCGTTCCTGCCCAGCGCCTGCACCGCCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
53.472 |
99.31 |
0.531 |
| pilA | Pseudomonas aeruginosa PAK |
44.805 |
100 |
0.476 |
| pilA | Vibrio cholerae strain A1552 |
44.371 |
100 |
0.462 |
| pilA | Vibrio cholerae C6706 |
44.371 |
100 |
0.462 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.371 |
100 |
0.462 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.898 |
100 |
0.455 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.092 |
90.345 |
0.434 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
45.528 |
84.828 |
0.386 |