Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PJ259_RS11705 Genome accession   NZ_CP116340
Coordinates   2528205..2529077 (-) Length   290 a.a.
NCBI ID   WP_271652930.1    Uniprot ID   -
Organism   Pseudomonas sp. JBR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523205..2534077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ259_RS11685 (PJ259_11685) recC 2523278..2526709 (-) 3432 WP_271652927.1 exodeoxyribonuclease V subunit gamma -
  PJ259_RS11690 (PJ259_11690) - 2526892..2527389 (+) 498 WP_271652928.1 hypothetical protein -
  PJ259_RS11695 (PJ259_11695) yacG 2527403..2527600 (-) 198 WP_007160931.1 DNA gyrase inhibitor YacG -
  PJ259_RS11700 (PJ259_11700) coaE 2527597..2528208 (-) 612 WP_271652929.1 dephospho-CoA kinase -
  PJ259_RS11705 (PJ259_11705) pilD 2528205..2529077 (-) 873 WP_271652930.1 A24 family peptidase Machinery gene
  PJ259_RS11710 (PJ259_11710) pilC 2529077..2530294 (-) 1218 WP_271652931.1 type II secretion system F family protein Machinery gene
  PJ259_RS11715 (PJ259_11715) pilB 2530505..2532199 (-) 1695 WP_271652932.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJ259_RS11720 (PJ259_11720) pilA 2532412..2532849 (+) 438 WP_271652933.1 pilin Machinery gene

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31608.58 Da        Isoelectric Point: 7.9479

>NTDB_id=776678 PJ259_RS11705 WP_271652930.1 2528205..2529077(-) (pilD) [Pseudomonas sp. JBR1]
MALLEFLASAPLAAALCALILGLLVGSFLNVVVYRLPVMLRRDWQAEAREVLELPPEPAGAPFNLARPASRCPHCQRAVR
PWENVPVVSYLLLRGRCKGCEASISPRYPLVELACGLLSAWVIWHLGVTWQGGAFLLLTWGLLAASLIDADHQLLPDVIV
LPLLWLGLIANQFGLFTSLGDAIWGAVAGYLSLWLVFQLFRLVTGKEGMGYGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVITLRLRRAETSTPLPFGPYLAVAGWIALLWGDQITSLYLNFAGFR

Nucleotide


Download         Length: 873 bp        

>NTDB_id=776678 PJ259_RS11705 WP_271652930.1 2528205..2529077(-) (pilD) [Pseudomonas sp. JBR1]
ATGGCGCTGCTGGAGTTTTTGGCTAGCGCGCCGCTGGCCGCGGCGCTGTGCGCGCTGATCCTGGGGTTGCTGGTAGGCAG
CTTTCTCAATGTAGTGGTCTATCGGTTGCCGGTGATGCTGAGGCGGGATTGGCAGGCGGAGGCGCGTGAGGTGCTGGAAT
TGCCGCCCGAGCCGGCGGGAGCGCCTTTCAATCTGGCGCGACCCGCTTCCCGTTGCCCCCATTGCCAGCGCGCCGTGCGG
CCCTGGGAAAACGTGCCGGTGGTGAGTTATCTGCTTCTGCGCGGTCGCTGCAAGGGTTGTGAAGCCTCCATCAGCCCGCG
TTATCCGTTGGTTGAGCTCGCCTGTGGACTGTTGTCCGCCTGGGTCATCTGGCATCTGGGCGTGACCTGGCAGGGCGGGG
CCTTTCTGCTGCTGACCTGGGGCCTGCTGGCGGCCAGTCTGATCGACGCCGATCACCAGCTGTTGCCGGATGTCATCGTG
CTGCCGTTGTTGTGGCTGGGGTTGATCGCCAATCAATTCGGGCTGTTCACCAGCCTCGGCGATGCCATCTGGGGTGCAGT
GGCGGGCTATCTGAGTCTGTGGCTGGTGTTCCAGCTGTTCCGCCTGGTGACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGTTACTGGCGCTGCTCGGCGCCTGGGGCGGTTGGCAGATCCTGCCACTGACCATCCTGCTGTCGTCGCTGGTGGGT
GCCGTCCTGGGTGTCATCACCTTGCGCCTACGGCGGGCGGAAACCAGCACGCCCTTGCCCTTTGGTCCCTATCTGGCCGT
GGCGGGGTGGATTGCCTTGCTCTGGGGTGATCAAATAACCAGCTTGTACCTGAACTTCGCCGGATTCCGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.296

97.931

0.483
  pilD Acinetobacter baumannii D1279779

52.06

92.069

0.479
  pilD Vibrio campbellii strain DS40M4

48.592

97.931

0.476
  pilD Acinetobacter nosocomialis M2

51.311

92.069

0.472
  pilD Neisseria gonorrhoeae MS11

49.815

93.448

0.466