Detailed information NTG0776679

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PJ259_RS11710
• Genome accession: NZ_CP116340
• Coordinates: 2529077..2530294 (-)
• Length: 405 a.a.
• NCBI ID: WP_271652931.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JBR1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2524077..2535294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJ259_RS11690 (PJ259_11690)	-	2526892..2527389 (+)	498	WP_271652928.1	hypothetical protein	-
PJ259_RS11695 (PJ259_11695)	yacG	2527403..2527600 (-)	198	WP_007160931.1	DNA gyrase inhibitor YacG	-
PJ259_RS11700 (PJ259_11700)	coaE	2527597..2528208 (-)	612	WP_271652929.1	dephospho-CoA kinase	-
PJ259_RS11705 (PJ259_11705)	pilD	2528205..2529077 (-)	873	WP_271652930.1	A24 family peptidase	Machinery gene
PJ259_RS11710 (PJ259_11710)	pilC	2529077..2530294 (-)	1218	WP_271652931.1	type II secretion system F family protein	Machinery gene
PJ259_RS11715 (PJ259_11715)	pilB	2530505..2532199 (-)	1695	WP_271652932.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PJ259_RS11720 (PJ259_11720)	pilA	2532412..2532849 (+)	438	WP_271652933.1	pilin	Machinery gene
PJ259_RS11725 (PJ259_11725)	-	2532892..2534346 (+)	1455	WP_271652934.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44161.97 Da
• Isoelectric Point: 9.8100

>NTDB_id=776679 PJ259_RS11710 WP_271652931.1 2529077..2530294(-) (pilC) [Pseudomonas sp. JBR1]
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMLT
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLFVIAISEALQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDATDRGLLKIPLVGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide

• Length: 1218 bp

>NTDB_id=776679 PJ259_RS11710 WP_271652931.1 2529077..2530294(-) (pilC) [Pseudomonas sp. JBR1]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAAAT
GACGGGCTTGAATCCTGCCTTGATCAAGGCGCAGTTGCGCAAGCAGGGCATCAATCCGACCCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCTTGTTCACTCGACAGCTGGCGACCATGCTGACC
GCAGGGGTACCTCTGCTGCAGGCCTTCGACATCATCGGCGAGGGCTTCGATAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTCGCTGCGGGTAACAGCCTGGCCAACTCCTTGCGCAAGCAGCCGCAGTATTTCGACGACCTCTATT
GCAATCTGGTGGATGCCGGTGAGCAATCCGGTGCCTTGGAGACCTTGCTGGATCGGGTAGCGACCTACAAGGAAAAGACC
GAAGCGCTGAAAAAGAAGATCAAGAAGGCTATGACCTACCCGGCGGCAGTCATCGTGGTCGCGGTGATCGTGTCGGCTAT
TCTGCTGATCAAGGTAGTGCCGCAATTCCAGTCTGTGTTCGAAGGCTTTGGCGCTCAGTTGCCAGCCTTCACGCTGTTTG
TTATCGCCATTTCTGAAGCGTTGCAGGAATGGTGGTTGCTAGTACTTGGCGGACTCTTCGTACTCGCTTTCGTCCTGCGC
CACTTCTACAAGAAGTCGGAAAAATTCCGCGACGCGACGGATCGTGGTTTGCTAAAAATTCCTCTTGTCGGCTCGATTCT
CTACAAGTCAGCCATCGCCCGTTATGCCCGCACGTTGGCTACCACCTTCGCGGCAGGTGTGCCGCTGGTGGATGCCCTGG
ACTCAGTGGCTGGTGCGACCGGCAATGTGGTATTCCGCAATGCCGTGGAGAAGATCAAGGGCGATGTTTCCACCGGTATG
CAGCTCAACTTTTCCATGCGGACTACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGG
TTCCCTGGACGAGATGCTGTCCAAGGTCGCGACCTTCTATGAGGACGAGGTCGACAACATGGTCGACAATCTCACCACCC
TGATGGAGCCAATGATCATGGCGGTCCTCGGGGTTCTGGTGGGTGGTCTGATCATCGCCATGTACCTGCCCATCTTCCAG
CTCGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	79.259	100	0.793
pilC	Acinetobacter baylyi ADP1	59.314	100	0.598
pilC	Acinetobacter baumannii D1279779	58.911	99.753	0.588
pilC	Legionella pneumophila strain ERS1305867	54.408	98.025	0.533
pilG	Neisseria meningitidis 44/76-A	45.32	100	0.454
pilG	Neisseria gonorrhoeae MS11	45.074	100	0.452
pilC	Vibrio cholerae strain A1552	42.716	100	0.427
pilC	Vibrio campbellii strain DS40M4	40.196	100	0.405
pilC	Thermus thermophilus HB27	38.462	99.506	0.383