Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PG915_RS00980 Genome accession   NZ_CP115920
Coordinates   207094..208194 (+) Length   366 a.a.
NCBI ID   WP_353497509.1    Uniprot ID   -
Organism   Vibrio chaetopteri strain CB1-14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 202094..213194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS00960 (PG915_00960) rsmB 203025..204305 (-) 1281 WP_353497505.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PG915_RS00965 (PG915_00965) fmt 204394..205341 (-) 948 WP_353497506.1 methionyl-tRNA formyltransferase -
  PG915_RS00970 (PG915_00970) def 205378..205887 (-) 510 WP_353497507.1 peptide deformylase -
  PG915_RS00975 (PG915_00975) - 206003..207082 (+) 1080 WP_353497508.1 LysM peptidoglycan-binding domain-containing protein -
  PG915_RS00980 (PG915_00980) dprA 207094..208194 (+) 1101 WP_353497509.1 DNA-processing protein DprA Machinery gene
  PG915_RS00985 (PG915_00985) - 208197..208673 (+) 477 WP_042502388.1 DUF494 family protein -
  PG915_RS00990 (PG915_00990) - 208719..209297 (+) 579 WP_353497510.1 type I DNA topoisomerase -
  PG915_RS00995 (PG915_00995) - 209346..210476 (-) 1131 WP_353498631.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PG915_RS01000 (PG915_01000) purE 210479..210964 (-) 486 WP_353497511.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PG915_RS01005 (PG915_01005) - 211148..211705 (+) 558 WP_353497512.1 L-threonylcarbamoyladenylate synthase -
  PG915_RS01010 (PG915_01010) hemF 211715..212620 (+) 906 WP_353497513.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39657.37 Da        Isoelectric Point: 6.2797

>NTDB_id=774434 PG915_RS00980 WP_353497509.1 207094..208194(+) (dprA) [Vibrio chaetopteri strain CB1-14]
MDDSNALAWLRLSLCPGIGPVTFYKLLAVDDPRNIVESDEQTLSAIGLKPNQVSFIRKQSVELAERAFAWRENANNHILL
QQGDDYPPLLRESKGCPPILFVQGDVALLSEPQIAMVGSRNASSGGLETARSFAAEFVNFGYCVTSGLALGIDGHAHQGA
LEANGKTIAVLGAGLDSIYPARHKSLAQRIAQQGALVSEHLPWIKPRAEHFPRRNRIVSGLSLGVVVVEAAEKSGSLITA
RYAAEQGREVFAVPGSIRHAYHQGCHSLIRTGACLVQKVEDVLCEIESLSNWSKKVQPTLFDQVIDKEELPYADLLANVG
IEATPVDILAQKTHIPVQEVMQQLLELELLGHVVAVNGGYILKGRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=774434 PG915_RS00980 WP_353497509.1 207094..208194(+) (dprA) [Vibrio chaetopteri strain CB1-14]
ATGGATGACAGTAATGCCTTAGCGTGGCTGCGACTTTCGTTATGTCCAGGTATTGGTCCTGTGACCTTCTATAAGCTGCT
CGCAGTGGATGATCCACGGAATATCGTTGAATCAGATGAGCAGACATTATCAGCAATTGGACTTAAGCCCAATCAGGTCA
GTTTTATTCGTAAGCAGTCTGTTGAGCTCGCAGAGCGAGCCTTCGCTTGGCGAGAAAATGCGAATAATCACATCCTTCTT
CAGCAAGGTGACGACTATCCGCCGCTGTTACGAGAATCTAAAGGCTGTCCGCCAATACTTTTTGTACAAGGTGACGTGGC
GTTGTTATCAGAGCCGCAAATCGCCATGGTTGGCAGCCGAAACGCCAGTTCTGGCGGTTTGGAAACAGCGCGCAGCTTTG
CTGCGGAATTCGTTAACTTTGGCTACTGCGTAACAAGTGGATTGGCACTGGGTATCGACGGTCATGCCCATCAAGGAGCG
CTTGAGGCAAATGGCAAGACCATCGCTGTGTTGGGGGCTGGGCTGGATTCAATTTATCCCGCTAGGCACAAGTCACTCGC
GCAGCGCATCGCTCAGCAAGGTGCGCTCGTCAGTGAGCATTTACCTTGGATCAAACCGAGAGCGGAACACTTTCCAAGAC
GAAACCGAATTGTCAGTGGCTTGTCGTTGGGCGTTGTTGTGGTGGAAGCTGCGGAGAAAAGTGGTTCGTTAATTACAGCA
AGGTATGCGGCAGAGCAGGGGCGTGAGGTGTTTGCTGTGCCAGGTTCGATTCGTCATGCTTATCATCAGGGGTGTCATTC
ATTAATACGAACCGGTGCCTGTCTCGTACAAAAGGTGGAAGATGTACTATGTGAAATAGAATCTCTATCGAACTGGTCTA
AAAAAGTACAACCAACACTTTTCGACCAAGTTATTGATAAAGAAGAATTGCCATATGCAGATCTGTTGGCTAACGTAGGA
ATAGAGGCAACGCCGGTTGATATTTTGGCTCAAAAGACCCATATTCCTGTTCAAGAGGTCATGCAACAGCTTTTAGAGCT
CGAGTTACTGGGCCATGTTGTTGCGGTTAACGGTGGTTATATTCTTAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(310-359)

DNA recombination-mediator protein A (DNA_processg_A)

(73-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

59.836

100

0.598
  dprA Vibrio cholerae strain A1552

56.873

100

0.576
  dprA Glaesserella parasuis strain SC1401

45.924

100

0.462
  dprA Legionella pneumophila strain ERS1305867

43.642

94.536

0.413
  dprA Neisseria meningitidis MC58

37.157

100

0.407
  dprA Neisseria meningitidis strain C311

37.157

100

0.407
  dprA Haemophilus influenzae Rd KW20

43.62

92.077

0.402
  dprA Neisseria gonorrhoeae MS11

37.629

100

0.399
  dprA Neisseria gonorrhoeae strain FA1090

37.371

100

0.396
  dprA Acinetobacter baylyi ADP1

42.262

91.803

0.388
  dprA Acinetobacter baumannii D1279779

43.119

89.344

0.385
  dprA Acinetobacter baumannii strain A118

42.462

88.798

0.377