Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PG878_RS05880 Genome accession   NZ_CP115873
Coordinates   1314082..1315341 (-) Length   419 a.a.
NCBI ID   WP_209029525.1    Uniprot ID   -
Organism   Xanthomonas hawaiiensis strain A6251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1309082..1320341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG878_RS05855 (PG878_05845) - 1309759..1311219 (-) 1461 WP_209029521.1 MATE family efflux transporter -
  PG878_RS05860 - 1311498..1311956 (-) 459 WP_311186046.1 chorismate-binding protein -
  PG878_RS05865 (PG878_05855) - 1312025..1312432 (+) 408 WP_209029522.1 RNA-binding S4 domain-containing protein -
  PG878_RS05870 (PG878_05860) coaE 1312575..1313198 (-) 624 WP_209029523.1 dephospho-CoA kinase -
  PG878_RS05875 (PG878_05865) - 1313212..1314075 (-) 864 WP_209029524.1 A24 family peptidase -
  PG878_RS05880 (PG878_05870) pilC 1314082..1315341 (-) 1260 WP_209029525.1 type II secretion system F family protein Machinery gene
  PG878_RS05885 (PG878_05875) comP 1315711..1316136 (+) 426 WP_209029526.1 pilin Machinery gene
  PG878_RS05890 (PG878_05880) pilB 1316339..1318075 (+) 1737 WP_209029527.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PG878_RS05895 (PG878_05885) pilR 1318322..1319710 (-) 1389 WP_209029528.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45877.16 Da        Isoelectric Point: 10.2197

>NTDB_id=774108 PG878_RS05880 WP_209029525.1 1314082..1315341(-) (pilC) [Xanthomonas hawaiiensis strain A6251]
MSATRSAVKKEPVARAASQQVPFVWEGTDKRGIKMKGEQTAKSANLLRAELRRQGITPSLVKPKPKPLFGANGRKIGAKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKQMVDHIRTDIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIRKALFYPAMVMAVALIVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVTASRFMVSYWWM
LLLLLVGSIGGFIFAYKRSPSMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=774108 PG878_RS05880 WP_209029525.1 1314082..1315341(-) (pilC) [Xanthomonas hawaiiensis strain A6251]
ATGTCCGCAACGCGCAGCGCAGTCAAAAAAGAACCGGTCGCGCGTGCGGCCAGCCAGCAGGTACCTTTCGTCTGGGAGGG
CACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACGGCGAAAAGTGCCAACCTACTGCGCGCAGAACTCCGCCGCC
AAGGCATCACTCCGTCTTTAGTCAAGCCCAAGCCAAAACCTTTGTTCGGCGCTAACGGCCGCAAGATCGGCGCCAAGGAC
ATCGCTTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCCGGCGTCCCGATCGTGGGCTCCCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGCAGATGGTCGACCATATCCGGACAGACATCGAGGGCGGCTCTTCGCTCTATGAAG
CAATCAGCAGACATCCGGTGCAATTTGACGAGTTGTACCGCAACTTGGTACGTGCCGGCGAAGGCGCCGGCGTTCTTGAG
ACCGTGCTGGAGACGGTCGCAACCTACAAGGAAAACATCGAAGCACTGAAGGGCAAGATCAGGAAAGCCTTGTTCTATCC
GGCCATGGTAATGGCCGTCGCTTTGATCGTCAGTTCAATCCTGTTGGTGTGGGTGGTGCCACAGTTCGAGGATGTGTTCA
AGGGTTTCGGTGCGGAACTGCCTGCCTTCACCCAGATGATCGTCACCGCCTCACGCTTCATGGTTTCTTACTGGTGGATG
CTATTGCTCTTACTGGTCGGCAGCATCGGCGGCTTCATCTTTGCCTACAAACGCTCTCCTTCGATGCAGCACGGCATGGA
TCGACTGGTGCTCAAGGTGCCGATCATCGGTCAGATCATGCACAACAGTTCAGTGGCGCGCTTCTCGCGCACTTTGGGAG
TGACTTTCCGTGCCGGCGTGCCGCTGGTGGAGGCGCTGGACATCGTCGCCGGCGCCACCGGCAATAGCGTCTACGAAAAA
GCCGTGTTGCGCATGCGCGACGACGTGGCCGTAGGCTATCCGGTCAACATGGCGATGAAGCAGACGAATCTGTTCCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTAGCCGAGTATTTCG
AGCAGGAAGTGAACAACGCGGTCGATGCCTTGAGCAGCCTGATCGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.97

96.897

0.504
  pilC Legionella pneumophila strain ERS1305867

52.525

94.511

0.496
  pilC Acinetobacter baylyi ADP1

50.49

97.375

0.492
  pilC Acinetobacter baumannii D1279779

50.62

96.181

0.487
  pilG Neisseria gonorrhoeae MS11

43.35

96.897

0.42
  pilG Neisseria meningitidis 44/76-A

42.752

97.136

0.415
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

40.842

96.42

0.394
  pilC Thermus thermophilus HB27

38.945

94.988

0.37