Detailed information NTG0774111

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PG878_RS05895
• Genome accession: NZ_CP115873
• Coordinates: 1318322..1319710 (-)
• Length: 462 a.a.
• NCBI ID: WP_209029528.1
• Uniprot ID: -
• Organism: Xanthomonas hawaiiensis strain A6251
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1313322..1324710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG878_RS05880 (PG878_05870)	pilC	1314082..1315341 (-)	1260	WP_209029525.1	type II secretion system F family protein	Machinery gene
PG878_RS05885 (PG878_05875)	comP	1315711..1316136 (+)	426	WP_209029526.1	pilin	Machinery gene
PG878_RS05890 (PG878_05880)	pilB	1316339..1318075 (+)	1737	WP_209029527.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PG878_RS05895 (PG878_05885)	pilR	1318322..1319710 (-)	1389	WP_209029528.1	sigma-54 dependent transcriptional regulator	Regulator
PG878_RS05900 (PG878_05890)	-	1319793..1321406 (-)	1614	WP_209029529.1	ATP-binding protein	-
PG878_RS05905 (PG878_05895)	sucC	1321748..1322917 (+)	1170	WP_209029530.1	ADP-forming succinate--CoA ligase subunit beta	-
PG878_RS05910 (PG878_05900)	sucD	1322940..1323815 (+)	876	WP_209029531.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49817.22 Da
• Isoelectric Point: 6.6703

>NTDB_id=774111 PG878_RS05895 WP_209029528.1 1318322..1319710(-) (pilR) [Xanthomonas hawaiiensis strain A6251]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPPPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAASEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISAADLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=774111 PG878_RS05895 WP_209029528.1 1318322..1319710(-) (pilR) [Xanthomonas hawaiiensis strain A6251]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCAAACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCAGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAGAGCCGCGCCGCGCCGCCGCCGCCGG
CCCCGGAGCAGGCCAGCCGCCTGCTGGGTGCCTCGGCGGCGATGGACGCGCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
CCGCGCCGCCGGCCCGTTCGTACCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCCAGCGAAGTGCCGGTGGACGTGCGGATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAGCTGGCCGCGGCGATCCTGGCGCGACTGGCCAAAAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCTTCGGCGCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAATTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAGGCCGCCCCGGCG
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCACTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTTCGGGCGTTGCGCT
ACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.554	100	0.626
pilR	Acinetobacter baumannii strain A118	46.868	100	0.47