Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PGN41_RS05285 Genome accession   NZ_CP115820
Coordinates   1115537..1116757 (-) Length   406 a.a.
NCBI ID   WP_271105069.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain Q4-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1110537..1121757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN41_RS05240 - 1110961..1111134 (-) 174 WP_173173318.1 DUF3094 domain-containing protein -
  PGN41_RS05245 - 1111221..1111847 (-) 627 WP_173173316.1 DUF1780 domain-containing protein -
  PGN41_RS05250 - 1111960..1112385 (+) 426 WP_173173313.1 GNAT family N-acetyltransferase -
  PGN41_RS05255 - 1112382..1112849 (+) 468 WP_271105066.1 FAD/FMN-containing dehydrogenase -
  PGN41_RS05260 - 1112846..1113532 (+) 687 WP_173173311.1 energy-coupling factor ABC transporter permease -
  PGN41_RS05265 - 1113640..1113855 (+) 216 WP_213628504.1 hypothetical protein -
  PGN41_RS05270 yacG 1113859..1114059 (-) 201 WP_111263622.1 DNA gyrase inhibitor YacG -
  PGN41_RS05275 coaE 1114056..1114667 (-) 612 WP_271105067.1 dephospho-CoA kinase -
  PGN41_RS05280 pilD 1114667..1115536 (-) 870 WP_271105068.1 prepilin peptidase Machinery gene
  PGN41_RS05285 pilC 1115537..1116757 (-) 1221 WP_271105069.1 type II secretion system F family protein Machinery gene
  PGN41_RS05290 pilB 1116761..1118464 (-) 1704 WP_271105070.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGN41_RS05295 pilA 1118567..1118995 (-) 429 WP_271105071.1 pilin Machinery gene
  PGN41_RS05300 - 1119106..1120851 (+) 1746 WP_271105072.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43995.62 Da        Isoelectric Point: 9.8996

>NTDB_id=773851 PGN41_RS05285 WP_271105069.1 1115537..1116757(-) (pilC) [Pseudomonas tohonis strain Q4-3]
MAEKALKASVFKWEGTDKKGSKVSGEISGLNPALVKAQLRKQGVNPTKVRKKAASLFGAGKKIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNQNMRKLVDEVKQEVASGNSLANSLRKKPLFFDDLYCNLVDSGEQAGALESLLDRIATYKEKT
ESLKAKIKKAMTYPIAVVLVALVVSAILLIKVVPQFQSVFSGFGAELPAFTQMVINLSEVLQTWWFVFLIAIFGASFTLR
EAHRRSEKFRDAMDRGVLKLPIVGDILYKSAVARFARTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVAKVKQDVSTGM
QLNFSMRTTGVFPSMAVQMTAIGEESGALDTMLDKVASFYEEEVDNAVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=773851 PGN41_RS05285 WP_271105069.1 1115537..1116757(-) (pilC) [Pseudomonas tohonis strain Q4-3]
ATGGCGGAAAAAGCACTAAAAGCGAGTGTCTTCAAATGGGAAGGCACCGACAAAAAAGGCAGCAAGGTCAGCGGTGAAAT
CAGCGGGCTAAACCCTGCGCTGGTCAAAGCACAACTGCGCAAGCAAGGGGTCAACCCGACAAAGGTACGCAAGAAAGCTG
CTTCCCTTTTCGGTGCGGGCAAGAAGATCAAGCCTTTGGACATCGCGCTCTTCACTCGGCAAATGGCCACCATGATGAAG
GCAGGCGTTCCTCTCCTTCAAAGCTTTGACATCATCGGGGAAGGATTCGACAACCAGAACATGCGCAAACTGGTTGACGA
AGTGAAGCAAGAGGTGGCCTCGGGCAACAGTCTGGCCAACTCACTTCGTAAAAAACCACTCTTTTTTGATGATCTTTATT
GCAACTTGGTGGACTCCGGCGAACAAGCCGGTGCGCTCGAGAGCCTGCTTGACCGCATTGCAACCTATAAGGAAAAAACC
GAATCCCTGAAGGCCAAGATCAAGAAGGCGATGACCTACCCCATCGCCGTAGTCTTGGTAGCGCTGGTCGTTTCGGCTAT
CCTTCTGATCAAGGTCGTCCCCCAATTCCAGTCGGTGTTCTCGGGCTTCGGAGCGGAACTACCTGCCTTTACTCAGATGG
TGATCAACCTCTCCGAGGTCTTGCAAACTTGGTGGTTCGTCTTCCTGATCGCCATTTTTGGTGCTTCCTTTACGTTGCGT
GAAGCACATCGGCGCTCCGAGAAGTTCCGCGATGCCATGGATCGGGGGGTCCTGAAACTGCCGATTGTGGGTGACATCCT
CTACAAGTCTGCTGTAGCGCGGTTCGCACGTACCCTGTCTACTACCTTTGCTGCCGGTGTTCCGCTCGTGGAAGCACTGG
ACTCGGTATCTGGCGCCACGGGCAACGTGGTCTTCAAGAATGCGGTAGCCAAGGTCAAACAGGACGTGTCGACAGGTATG
CAACTGAACTTCTCAATGCGTACTACTGGTGTATTCCCGTCAATGGCAGTTCAGATGACAGCTATCGGTGAGGAATCCGG
CGCACTGGACACCATGCTCGACAAAGTCGCCTCCTTCTACGAAGAAGAAGTCGACAACGCCGTCGACAACCTGACCACCC
TGATGGAGCCCCTGATCATGGCGGTTCTCGGCGTGCTGGTCGGCGGTCTGATCATCGCGATGTACCTGCCTATCTTCCAA
CTCGGTTCGGTAGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.506

99.754

0.793
  pilC Acinetobacter baumannii D1279779

59.259

99.754

0.591
  pilC Acinetobacter baylyi ADP1

59.113

100

0.591
  pilC Legionella pneumophila strain ERS1305867

54.293

97.537

0.53
  pilC Vibrio cholerae strain A1552

43.35

100

0.434
  pilG Neisseria meningitidis 44/76-A

43.284

99.015

0.429
  pilG Neisseria gonorrhoeae MS11

43.284

99.015

0.429
  pilC Vibrio campbellii strain DS40M4

42.569

97.783

0.416
  pilC Thermus thermophilus HB27

37.75

98.522

0.372