Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AVT_RS04810 Genome accession   NZ_CP115303
Coordinates   918222..918581 (-) Length   119 a.a.
NCBI ID   WP_087964217.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 913222..923581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS04785 (AVT_04785) argS 913254..914942 (-) 1689 WP_087964213.1 arginine--tRNA ligase -
  AVT_RS04790 (AVT_04790) - 915243..916019 (-) 777 WP_087964214.1 class I SAM-dependent methyltransferase -
  AVT_RS04795 (AVT_04795) - 916069..916503 (-) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  AVT_RS04800 (AVT_04800) - 916587..916970 (-) 384 WP_087964215.1 thiol-disulfide oxidoreductase DCC family protein -
  AVT_RS04805 (AVT_04805) - 916974..918101 (-) 1128 WP_087964216.1 conserved virulence factor C family protein -
  AVT_RS04810 (AVT_04810) ssbA 918222..918581 (-) 360 WP_087964217.1 single-stranded DNA-binding protein Machinery gene
  AVT_RS04815 (AVT_04815) - 918741..918995 (-) 255 WP_087964218.1 DUF4318 domain-containing protein -
  AVT_RS04820 (AVT_04820) - 919101..919832 (-) 732 WP_001260642.1 Bax inhibitor-1/YccA family membrane protein -
  AVT_RS04825 (AVT_04825) - 919908..921803 (-) 1896 WP_000783207.1 ABC-F family ATP-binding cassette domain-containing protein -
  AVT_RS04830 (AVT_04830) - 921800..922447 (-) 648 WP_087964219.1 HD domain-containing protein -
  AVT_RS04835 (AVT_04835) - 922557..923402 (+) 846 WP_087964220.1 hypothetical protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13665.65 Da        Isoelectric Point: 9.6554

>NTDB_id=771714 AVT_RS04810 WP_087964217.1 918222..918581(-) (ssbA) [Bacillus tropicus strain JMT105-2]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVLIESITFLEKRREGASKKDGTWGN

Nucleotide


Download         Length: 360 bp        

>NTDB_id=771714 AVT_RS04810 WP_087964217.1 918222..918581(-) (ssbA) [Bacillus tropicus strain JMT105-2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAGCAAGTAGATTTTATTAATTGTGTCGTTT
GGAGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACAGAAGTTCTGATTGAGAGCATTACATTTTTGGAGAAAAGGCG
GGAGGGTGCATCAAAAAAAGATGGGACTTGGGGGAATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

89.076

0.529
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.571

94.118

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

89.076

0.496
  ssbB Lactococcus lactis subsp. cremoris KW2

48.276

97.479

0.471
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.737

95.798

0.429
  ssbA Streptococcus mutans UA159

42.241

97.479

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.228

95.798

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

41.228

95.798

0.395
  ssbB/cilA Streptococcus pneumoniae D39

40.351

95.798

0.387
  ssbB/cilA Streptococcus pneumoniae R6

40.351

95.798

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

40.351

95.798

0.387
  ssbB/cilA Streptococcus mitis SK321

40.351

95.798

0.387