Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O8I58_RS06515 Genome accession   NZ_CP114978
Coordinates   1481931..1483193 (+) Length   420 a.a.
NCBI ID   WP_298321586.1    Uniprot ID   -
Organism   MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476931..1488193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8I58_RS06500 (O8I58_06500) pilR 1477362..1478807 (+) 1446 WP_298321583.1 sigma-54 dependent transcriptional regulator Regulator
  O8I58_RS06505 (O8I58_06505) pilA2 1479315..1479758 (+) 444 WP_298321584.1 pilin Machinery gene
  O8I58_RS06510 (O8I58_06510) pilB 1480008..1481738 (+) 1731 WP_298321585.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O8I58_RS06515 (O8I58_06515) pilC 1481931..1483193 (+) 1263 WP_298321586.1 type II secretion system F family protein Machinery gene
  O8I58_RS06520 (O8I58_06520) - 1483197..1484060 (+) 864 WP_298321587.1 A24 family peptidase -
  O8I58_RS06525 (O8I58_06525) - 1484156..1485160 (-) 1005 WP_298321588.1 class I fructose-bisphosphate aldolase -
  O8I58_RS06530 (O8I58_06530) pyk 1485478..1486947 (-) 1470 WP_298321589.1 pyruvate kinase -
  O8I58_RS06535 (O8I58_06535) - 1487169..1487813 (-) 645 WP_298321590.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45467.76 Da        Isoelectric Point: 10.1825

>NTDB_id=767666 O8I58_RS06515 WP_298321586.1 1481931..1483193(+) (pilC) [MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2]
MAVTRSAARKSAPVARNTKQLVTFVWQGTDKRGIKMQGEQEARNANLLRAELRTKGITPTVLKPKPKPLFGAAGKPIKPG
DIAFFSRQMATMMKSGVPIVTSLEIIGSGHKNPRMKKMLEGIRADIEGGSSLSEAISKYPVQFDELYRNLVRAGEGAGVL
ETVLDTIANYKENTEALKGKIKKALFYPAMTIAVALIVSAILLIFVVPQFQAVFTSFGADLPAFTKMIIAASDFAISYWW
LAAIILIGGGIAFVMAFKRSLAFQHFLDRVILKVPVIGQIMHNSAIARFSRTLAVTFKAGVPLVEALDTISGATGSTVYE
KAVLRIRDDVSVGYPVNMAMKQTSLFPHMVVQMTAIGEEAGALDTMLFKVAEYYEQEVDNAVDALSSLIEPMIMVVLGVL
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=767666 O8I58_RS06515 WP_298321586.1 1481931..1483193(+) (pilC) [MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2]
ATGGCCGTAACCCGTTCAGCCGCCCGGAAATCCGCCCCGGTCGCGCGCAACACCAAACAGCTGGTCACCTTTGTCTGGCA
AGGCACGGACAAGCGCGGCATCAAGATGCAGGGCGAACAGGAAGCGCGCAACGCCAACCTGCTGCGTGCCGAGTTGCGGA
CCAAGGGCATCACGCCGACAGTCCTCAAGCCCAAGCCCAAGCCGCTGTTTGGCGCAGCCGGCAAACCGATCAAGCCTGGT
GACATTGCCTTCTTCAGTCGCCAGATGGCGACGATGATGAAGTCCGGCGTCCCCATCGTGACGTCCCTGGAAATCATCGG
CAGCGGCCATAAGAACCCGCGCATGAAGAAGATGCTGGAAGGCATCCGGGCCGATATCGAGGGCGGCTCCTCACTCTCTG
AAGCCATCAGCAAATATCCCGTCCAGTTCGACGAGCTGTACCGCAACCTGGTGCGTGCAGGCGAAGGCGCAGGCGTGCTT
GAGACGGTGCTGGATACCATTGCGAACTACAAGGAAAACACCGAAGCACTCAAGGGCAAGATCAAGAAGGCATTGTTCTA
CCCGGCAATGACCATCGCGGTTGCTCTGATCGTCAGCGCGATCCTGCTGATTTTCGTGGTGCCGCAGTTCCAGGCTGTTT
TCACCAGCTTTGGCGCAGACCTTCCCGCCTTCACCAAGATGATCATCGCGGCGTCGGATTTCGCCATTTCCTATTGGTGG
CTCGCGGCCATCATCCTGATCGGCGGCGGCATCGCCTTTGTCATGGCGTTCAAGCGGTCTTTGGCGTTCCAGCATTTCCT
GGACCGCGTCATCCTCAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTGCAATCGCACGCTTCTCACGCACGCTGG
CCGTGACCTTCAAGGCGGGCGTTCCACTGGTCGAGGCCTTGGACACGATTTCCGGCGCCACCGGAAGCACGGTCTACGAG
AAGGCCGTGCTGCGCATCCGCGATGACGTGTCGGTCGGCTACCCGGTCAACATGGCGATGAAGCAGACCAGCCTGTTCCC
GCATATGGTGGTCCAGATGACCGCCATCGGCGAAGAGGCTGGCGCGCTGGACACGATGCTGTTCAAGGTCGCCGAGTACT
ACGAGCAGGAAGTCGACAATGCCGTGGACGCGCTGAGCAGCCTGATCGAACCGATGATCATGGTGGTGCTGGGCGTGCTG
GTCGGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAACTCGGCGCGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.286

0.51
  pilC Acinetobacter baylyi ADP1

51.597

96.905

0.5
  pilC Legionella pneumophila strain ERS1305867

51.98

96.19

0.5
  pilC Acinetobacter baumannii D1279779

49.877

96.429

0.481
  pilG Neisseria gonorrhoeae MS11

43.75

95.238

0.417
  pilG Neisseria meningitidis 44/76-A

43.5

95.238

0.414
  pilC Vibrio cholerae strain A1552

40.196

97.143

0.39
  pilC Vibrio campbellii strain DS40M4

40.399

95.476

0.386
  pilC Thermus thermophilus HB27

38.191

94.762

0.362