Detailed information NTG0767663

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: O8I58_RS06500
• Genome accession: NZ_CP114978
• Coordinates: 1477362..1478807 (+)
• Length: 481 a.a.
• NCBI ID: WP_298321583.1
• Uniprot ID: -
• Organism: MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1472362..1483807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O8I58_RS06485 (O8I58_06485)	sucD	1472881..1473757 (-)	877	Protein_1273	succinate--CoA ligase subunit alpha	-
O8I58_RS06490 (O8I58_06490)	sucC	1473932..1475101 (-)	1170	WP_298321581.1	ADP-forming succinate--CoA ligase subunit beta	-
O8I58_RS06495 (O8I58_06495)	-	1475285..1476904 (+)	1620	WP_298321582.1	ATP-binding protein	-
O8I58_RS06500 (O8I58_06500)	pilR	1477362..1478807 (+)	1446	WP_298321583.1	sigma-54 dependent transcriptional regulator	Regulator
O8I58_RS06505 (O8I58_06505)	pilA2	1479315..1479758 (+)	444	WP_298321584.1	pilin	Machinery gene
O8I58_RS06510 (O8I58_06510)	pilB	1480008..1481738 (+)	1731	WP_298321585.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O8I58_RS06515 (O8I58_06515)	pilC	1481931..1483193 (+)	1263	WP_298321586.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 481 a.a.
• Molecular weight: 52427.00 Da
• Isoelectric Point: 6.2027

>NTDB_id=767663 O8I58_RS06500 WP_298321583.1 1477362..1478807(+) (pilR) [MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2]
MSDPRSALIVDDERDIRELLTLTLGRMGLRIDAAANLGEARELLSRNSYDLCFTDMRLPDGNGIELVSEISRNFPKTPVA
MITAFGNVELAVEALKAGAFDFVSKPVDLNVLRGLVRNALQLNDTERPAPTPAPVQHAMRLLGDSRVMAELRQTIAKVAR
SQAPVYILGESGVGKELVARTIHEQGGRANGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKIGLFQAASGGTLFLD
EVAELPLSMQVKLLRAIQEKAVRPVGASGEIQVDVRILSATHKDLGELAHDGRFRHDLYYRINVIELRVPPLRERTGDLP
QLTQAILTRLAATHDRAAPLLSPVALDALGQYPFPGNVRELENILERAMAMADEDAIDAGDLRLPQIERRTPAAPAPQAA
SQDYDPFRSSPAPFGQPAAPVAHEPPASESDAPLPSYIEQMERAAIHKALEDNRWNKTKAAAQLGITFRALRYKLKKLGI
E

Nucleotide

• Length: 1446 bp

>NTDB_id=767663 O8I58_RS06500 WP_298321583.1 1477362..1478807(+) (pilR) [MAG: Pseudoxanthomonas sp. isolate Chal_Metagen_Bin2]
ATGAGCGACCCCCGTAGCGCCCTGATCGTCGATGACGAACGTGACATTCGTGAGCTGCTGACCCTGACCCTGGGACGCAT
GGGTCTACGGATCGACGCCGCCGCCAACCTTGGCGAAGCACGCGAACTCCTGTCCAGGAACAGCTACGACCTGTGCTTCA
CCGACATGCGCCTGCCTGACGGCAACGGCATCGAACTGGTCAGCGAGATTTCCAGGAATTTCCCCAAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTTGAACTGGCGGTCGAGGCCCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGATCTGAACGTCCTGCGCGGCCTGGTCCGCAATGCCCTGCAGTTGAACGACACCGAGCGCCCAGCACCGACGCCCGCCC
CGGTCCAGCACGCCATGCGCCTGCTCGGGGACTCGCGCGTGATGGCCGAACTGCGCCAGACCATCGCCAAGGTGGCCCGC
AGCCAGGCCCCCGTGTACATCCTGGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAGGGCGG
TCGCGCCAACGGGCCTTTCATCCCGGTCAACTGCGGCGCGATTCCGGCAGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGATCGGCCTGTTCCAGGCCGCCAGTGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAACTGCCACTGTCCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAAGCCGTCCGCCCGGTCGGCGC
CTCCGGCGAAATCCAGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGCCCACGATGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCCCTGCGCGAGCGCACCGGCGACCTGCCC
CAGCTGACCCAGGCCATCCTCACACGCCTGGCCGCGACCCATGACCGCGCAGCCCCCCTGCTGTCGCCGGTGGCCCTGGA
CGCGCTGGGCCAGTACCCGTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTGGAACGCGCCATGGCCATGGCCGACG
AGGATGCCATCGACGCCGGCGACCTACGCCTGCCACAGATCGAACGTCGCACCCCTGCCGCACCCGCGCCCCAGGCAGCG
TCACAGGACTACGACCCGTTCCGCTCCAGCCCCGCGCCGTTCGGCCAGCCAGCCGCACCCGTCGCGCACGAGCCACCCGC
CAGCGAAAGCGATGCCCCGCTGCCGTCCTATATCGAACAGATGGAACGCGCCGCGATCCACAAGGCGCTCGAAGACAACC
GCTGGAACAAGACCAAGGCCGCCGCGCAGCTGGGCATTACCTTCCGCGCCCTGCGCTACAAACTGAAGAAGCTCGGAATC
GAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (438-478)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.748	99.168	0.593
pilR	Acinetobacter baumannii strain A118	47.479	98.96	0.47