Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OOK74_RS00155 Genome accession   NZ_CP113241
Coordinates   35294..36409 (+) Length   371 a.a.
NCBI ID   WP_278182842.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 30294..41409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS00135 rsmB 31225..32505 (-) 1281 WP_274723461.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OOK74_RS00140 fmt 32560..33507 (-) 948 WP_278182841.1 methionyl-tRNA formyltransferase -
  OOK74_RS00145 def 33525..34034 (-) 510 WP_274723462.1 peptide deformylase -
  OOK74_RS00150 - 34173..35294 (+) 1122 WP_274723450.1 LysM peptidoglycan-binding domain-containing protein -
  OOK74_RS00155 dprA 35294..36409 (+) 1116 WP_278182842.1 DNA-processing protein DprA Machinery gene
  OOK74_RS00160 - 36412..36888 (+) 477 WP_274723452.1 DUF494 family protein -
  OOK74_RS00165 - 36900..37484 (+) 585 WP_278182843.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  OOK74_RS00170 - 37573..38706 (-) 1134 WP_277207595.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OOK74_RS00175 purE 38710..39195 (-) 486 WP_166013966.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OOK74_RS00180 - 39365..39922 (+) 558 WP_274723455.1 L-threonylcarbamoyladenylate synthase -
  OOK74_RS00185 hemF 39953..40873 (+) 921 WP_274723463.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39958.87 Da        Isoelectric Point: 7.8911

>NTDB_id=761082 OOK74_RS00155 WP_278182842.1 35294..36409(+) (dprA) [Vibrio sp. gvc]
MKDHDLATWLALCFTPKLGSRTLSYLLATQSPAHLSTFTPQQWLARGLKPEQLAFLTTRAAAQAEQSLQWRSAADHRYIV
TPHCSHYPRLLKEIAAPPPVLFIEGQLSALHDPALAIVGSRNASIDGRQIARQFATELVQSGLVVVSGLALGIDGHAHDG
ALQAKGQTVAVLGSGLAQIYPKQHQALAERIIAQGALVSEFAPHAAPRADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAADQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNPLSWLLSEQASRQATLFCASHSDEELPFPEL
LANVGVEATPIDILASRTKIPVQEIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=761082 OOK74_RS00155 WP_278182842.1 35294..36409(+) (dprA) [Vibrio sp. gvc]
ATGAAGGATCACGATTTAGCCACTTGGCTAGCGCTGTGTTTTACCCCCAAGCTGGGGAGCAGAACACTCTCTTATCTATT
GGCTACTCAATCGCCAGCTCATCTGTCAACCTTCACGCCTCAGCAATGGTTGGCGCGTGGCCTTAAACCAGAACAGTTAG
CCTTTTTAACCACTCGCGCCGCCGCGCAAGCTGAGCAGAGCTTGCAATGGCGTAGCGCTGCCGATCACCGCTACATAGTG
ACACCACATTGCTCGCACTATCCTCGTTTATTGAAAGAAATTGCAGCGCCGCCTCCGGTGCTGTTTATCGAAGGTCAGCT
ATCCGCTTTGCACGATCCTGCACTGGCGATTGTCGGTAGCCGTAATGCCAGTATTGACGGACGACAAATTGCGCGCCAGT
TTGCGACCGAGCTGGTTCAATCCGGGTTGGTGGTAGTCAGTGGATTAGCGCTCGGGATTGATGGACATGCGCATGATGGC
GCTTTGCAAGCCAAGGGGCAAACGGTGGCGGTATTGGGCTCTGGGTTAGCGCAAATCTACCCCAAACAGCATCAAGCTTT
GGCGGAGCGAATTATTGCCCAAGGCGCATTGGTTTCCGAGTTTGCACCGCATGCTGCACCGCGGGCCGATCACTTTCCAC
GCCGCAACCGTATTATTAGTGGTTTGTCACTGGGGGTGGTGGTGGTCGAAGCGGCGGAAAAAAGTGGTTCGCTGATCACC
GCCCGTTATGCTGCCGATCAAGGGCGTGAAGTTTTTGTGGTGCCCGGATCAATTTTCAACGCCGCCAGTCAGGGCAGTAA
TCAACTGATCCGGCAAGGGGCGTGTTTAGTGCAAAGCGTGCAACAGATCCATCAGGAGCTCAAAAATCCACTCTCTTGGT
TACTCTCTGAACAAGCATCGCGCCAAGCGACACTTTTTTGTGCCAGCCACAGTGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGTAGAAGCTACACCCATTGATATTCTGGCAAGCCGGACTAAAATCCCGGTGCAGGAAATCATGAT
GCAGCTCTTGGAGTTAGAACTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

86.253

100

0.863
  dprA Vibrio campbellii strain DS40M4

57.568

99.73

0.574
  dprA Glaesserella parasuis strain SC1401

41.24

100

0.412
  dprA Legionella pneumophila strain ERS1305867

46.769

87.601

0.41
  dprA Acinetobacter baumannii D1279779

44.578

89.488

0.399
  dprA Acinetobacter baumannii strain A118

43.713

90.027

0.394
  dprA Neisseria meningitidis strain C311

36.591

100

0.394
  dprA Neisseria meningitidis MC58

36.591

100

0.394
  dprA Acinetobacter baylyi ADP1

38.564

100

0.391
  dprA Neisseria gonorrhoeae strain FA1090

35.354

100

0.377
  dprA Neisseria gonorrhoeae MS11

35.101

100

0.375
  dprA Haemophilus influenzae Rd KW20

48.399

75.741

0.367