Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OSS47_RS13450 Genome accession   NZ_CP113096
Coordinates   2933646..2934863 (-) Length   405 a.a.
NCBI ID   WP_043318073.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2928646..2939863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS13410 (OSS47_13410) - 2928899..2929375 (+) 477 WP_043318058.1 hypothetical protein -
  OSS47_RS13415 (OSS47_13415) - 2929372..2930088 (+) 717 WP_043318060.1 energy-coupling factor ABC transporter permease -
  OSS47_RS13420 (OSS47_13420) - 2930196..2930411 (+) 216 WP_043318062.1 hypothetical protein -
  OSS47_RS30755 - 2930792..2930902 (-) 111 Protein_2647 DNA gyrase inhibitor YacG -
  OSS47_RS13425 (OSS47_13425) - 2930927..2931336 (-) 410 Protein_2648 putative toxin-antitoxin system toxin component, PIN family -
  OSS47_RS13430 (OSS47_13430) - 2931336..2931575 (-) 240 WP_043318065.1 ribbon-helix-helix domain-containing protein -
  OSS47_RS13435 (OSS47_13435) yacG 2931885..2932094 (-) 210 WP_043272268.1 DNA gyrase inhibitor YacG -
  OSS47_RS13440 (OSS47_13440) coaE 2932091..2932699 (-) 609 WP_043318067.1 dephospho-CoA kinase -
  OSS47_RS13445 (OSS47_13445) pilD 2932773..2933645 (-) 873 WP_043318069.1 prepilin peptidase Machinery gene
  OSS47_RS13450 (OSS47_13450) pilC 2933646..2934863 (-) 1218 WP_043318073.1 type II secretion system F family protein Machinery gene
  OSS47_RS13455 (OSS47_13455) pilB 2934867..2936570 (-) 1704 WP_043318075.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OSS47_RS13460 (OSS47_13460) pilA/pilAI 2936800..2937219 (+) 420 WP_043318077.1 pilin Machinery gene
  OSS47_RS13465 (OSS47_13465) - 2937280..2938713 (+) 1434 WP_082033897.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44027.83 Da        Isoelectric Point: 10.0333

>NTDB_id=760153 OSS47_RS13450 WP_043318073.1 2933646..2934863(-) (pilC) [Pseudomonas citronellolis strain G5Li.T10]
MAEKALKMSVFTWEGTDRKGGKVKGELSGTNTALVKAQLRKQGINPTKVRKKGISLLGKGKRIKPLDIALFTRQMATMMG
SGVPLLQSFDIIAEGFDNPNMRKLVEDIKQEVAAGNSLANSLRRKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIIVALVVSAILLIKVVPQFQSVFAGFGAELPAFTKMVINLSEVLQKWWIIVLIALFIIAFALK
EAHKRSEKFRDSVDRSILKLPIVGGIIYKSAVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKIKQDVSSGT
QLNFSMRTTGAFPTLAIQMAAIGEESGSLDAMLDKVATYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=760153 OSS47_RS13450 WP_043318073.1 2933646..2934863(-) (pilC) [Pseudomonas citronellolis strain G5Li.T10]
ATGGCGGAAAAAGCACTGAAGATGAGCGTCTTTACCTGGGAGGGTACGGATCGCAAGGGCGGGAAGGTAAAAGGGGAGCT
TTCCGGCACCAATACCGCGCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCAACCCGACCAAGGTACGCAAGAAAGGCA
TTTCGCTGCTGGGCAAGGGCAAGCGAATCAAGCCCCTGGACATCGCCCTCTTTACCCGGCAGATGGCCACCATGATGGGC
TCGGGGGTTCCGCTCCTGCAATCCTTCGACATCATTGCCGAAGGCTTCGACAACCCCAACATGCGCAAGCTGGTCGAGGA
CATCAAGCAGGAAGTCGCGGCCGGTAACAGCCTCGCCAACTCGCTGCGCAGGAAGCCGCAATACTTCGACGACCTCTACT
GCAACCTTGTCGATGCTGGTGAACAGTCCGGTGCACTGGAAACGCTGCTGGACCGCGTCGCCACCTACAAGGAAAAGACC
GAGTCACTGAAAGCCAAGATCAAGAAAGCGATGACCTATCCCATCGCAGTCATCATCGTGGCACTTGTAGTTTCGGCAAT
CCTGCTGATCAAAGTCGTCCCCCAGTTCCAATCGGTGTTCGCAGGTTTCGGAGCCGAACTGCCCGCCTTTACCAAGATGG
TCATCAACTTGTCAGAAGTGCTCCAGAAATGGTGGATTATTGTCCTGATAGCACTATTTATAATTGCCTTCGCCCTGAAG
GAGGCACATAAACGATCGGAGAAATTCCGCGATTCTGTTGACCGCAGCATTCTGAAACTACCGATCGTAGGCGGCATTAT
CTACAAGTCCGCTGTTGCCCGGTATGCACGCACGCTAGCAACCACCTTCGCAGCAGGTGTTCCCTTGGTGGAGGCGCTGG
ACTCGGTTGCCGGCGCTACTGGCAACGTCGTTTTTCGTAATGCCGTGAACAAAATCAAGCAAGACGTCTCTTCGGGTACT
CAACTCAACTTTTCCATGCGTACCACTGGAGCGTTCCCCACGCTGGCGATACAAATGGCCGCCATTGGTGAAGAATCCGG
CTCGCTGGACGCAATGCTGGACAAAGTAGCCACCTACTACGAAGAAGAAGTCGATAACGCCGTCGACAACCTCACCACTC
TGATGGAGCCAATGATCATGGCCGTTCTTGGTGTATTGGTAGGCGGCTTGGTCATCGCCATGTACCTCCCCATCTTCCAA
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.012

100

0.79
  pilC Acinetobacter baumannii D1279779

61.481

100

0.615
  pilC Acinetobacter baylyi ADP1

60.345

100

0.605
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilG Neisseria meningitidis 44/76-A

44.697

97.778

0.437
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

41.919

97.778

0.41
  pilC Thermus thermophilus HB27

36.973

99.506

0.368