Detailed information NTG0760152

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OSS47_RS13445
• Genome accession: NZ_CP113096
• Coordinates: 2932773..2933645 (-)
• Length: 290 a.a.
• NCBI ID: WP_043318069.1
• Uniprot ID: -
• Organism: Pseudomonas citronellolis strain G5Li.T10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2927773..2938645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSS47_RS13405 (OSS47_13405)	-	2928480..2928896 (+)	417	WP_043318056.1	GNAT family N-acetyltransferase	-
OSS47_RS13410 (OSS47_13410)	-	2928899..2929375 (+)	477	WP_043318058.1	hypothetical protein	-
OSS47_RS13415 (OSS47_13415)	-	2929372..2930088 (+)	717	WP_043318060.1	energy-coupling factor ABC transporter permease	-
OSS47_RS13420 (OSS47_13420)	-	2930196..2930411 (+)	216	WP_043318062.1	hypothetical protein	-
OSS47_RS30755	-	2930792..2930902 (-)	111	Protein_2647	DNA gyrase inhibitor YacG	-
OSS47_RS13425 (OSS47_13425)	-	2930927..2931336 (-)	410	Protein_2648	putative toxin-antitoxin system toxin component, PIN family	-
OSS47_RS13430 (OSS47_13430)	-	2931336..2931575 (-)	240	WP_043318065.1	ribbon-helix-helix domain-containing protein	-
OSS47_RS13435 (OSS47_13435)	yacG	2931885..2932094 (-)	210	WP_043272268.1	DNA gyrase inhibitor YacG	-
OSS47_RS13440 (OSS47_13440)	coaE	2932091..2932699 (-)	609	WP_043318067.1	dephospho-CoA kinase	-
OSS47_RS13445 (OSS47_13445)	pilD	2932773..2933645 (-)	873	WP_043318069.1	prepilin peptidase	Machinery gene
OSS47_RS13450 (OSS47_13450)	pilC	2933646..2934863 (-)	1218	WP_043318073.1	type II secretion system F family protein	Machinery gene
OSS47_RS13455 (OSS47_13455)	pilB	2934867..2936570 (-)	1704	WP_043318075.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OSS47_RS13460 (OSS47_13460)	pilA/pilAI	2936800..2937219 (+)	420	WP_043318077.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31890.79 Da
• Isoelectric Point: 6.7364

>NTDB_id=760152 OSS47_RS13445 WP_043318069.1 2932773..2933645(-) (pilD) [Pseudomonas citronellolis strain G5Li.T10]
MSVLDFLASHALAFVLCAALLGLLIGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQEPTYNLVLPNSACPHCGHEIR
ARENIPVVSYLALRGKCSACKAPISARYPLVELATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDALV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQLLPLTILFSSLVG
AVLGVILLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=760152 OSS47_RS13445 WP_043318069.1 2932773..2933645(-) (pilD) [Pseudomonas citronellolis strain G5Li.T10]
ATGTCTGTACTCGACTTCCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTACTCGGCCTGCTGATTGGCAG
CTTCCTCAACGTAGTTATCCACCGCCTGCCAAAGATGATGGAACTGGAGTGGCAGCAACAAGCGCGTGACGCTCTTTCCC
TGCCTCAGCCTGAGCAGGAGCCCACCTACAACCTGGTCCTACCCAACTCGGCGTGCCCGCACTGCGGCCATGAAATCCGT
GCCCGGGAGAATATCCCCGTAGTCAGCTACCTAGCCTTGCGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
TTATCCACTGGTCGAGCTGGCCACCGCTCTGCTCTCCGGCTTCGTTGCCTGGCATTTCGGTTTTACCTGGCAAGCCGGGG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCCATGAGCCTGATCGACGTCGATCACCAGCTACTGCCGGACGCCTTGGTG
CTGCCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTTGCCAGCCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGCTGTTGCCGCTGACCATTCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGGGTCATTCTGCTGCGTCTGCGCAATGCCGAGACCAGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGTTTCCGGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.818	94.828	0.548
pilD	Vibrio campbellii strain DS40M4	57.091	94.828	0.541
pilD	Acinetobacter baumannii D1279779	53.169	97.931	0.521
pilD	Acinetobacter nosocomialis M2	52.465	97.931	0.514
pilD	Neisseria gonorrhoeae MS11	49.286	96.552	0.476