NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	P7I81_RS11985	Genome accession	NZ_CP124648
Coordinates	2546749..2547837 (+)	Length	362 a.a.
NCBI ID	WP_124089914.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain 2020CK-00220
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2541749..2552837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I81_RS11965 (P7I81_11965)	rsmB	2542644..2543948 (-)	1305	WP_033954884.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
P7I81_RS11970 (P7I81_11970)	fmt	2543945..2544889 (-)	945	WP_023095008.1	methionyl-tRNA formyltransferase	-
P7I81_RS11975 (P7I81_11975)	def	2544944..2545450 (-)	507	WP_003097293.1	peptide deformylase	-
P7I81_RS11980 (P7I81_11980)	tsaP	2545589..2546614 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
P7I81_RS11985 (P7I81_11985)	dprA	2546749..2547837 (+)	1089	WP_124089914.1	DNA-processing protein DprA	Machinery gene
P7I81_RS11990 (P7I81_11990)	-	2547878..2548435 (+)	558	WP_003097300.1	Sua5/YciO/YrdC/YwlC family protein	-
P7I81_RS11995 (P7I81_11995)	-	2548445..2549422 (-)	978	WP_003097303.1	NADPH:quinone reductase	-
P7I81_RS12000 (P7I81_12000)	hemF	2549613..2550530 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
P7I81_RS12005 (P7I81_12005)	aroE	2550588..2551412 (+)	825	WP_003097314.1	shikimate dehydrogenase	-
P7I81_RS12010 (P7I81_12010)	-	2551523..2552509 (+)	987	WP_003111200.1	phospholipase C	-

Sequence

Protein

Download Length: 362 a.a. Molecular weight: 37759.31 Da Isoelectric Point: 7.0742

                                >NTDB_id=759470 P7I81_RS11985 WP_124089914.1 2546749..2547837(+) (dprA) [Pseudomonas aeruginosa strain 2020CK-00220]

MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPVEAAAARRSPAVREAAGEALRWLEGPR

RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA

AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS

GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP

YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide

Download Length: 1089 bp

                                >NTDB_id=759470 P7I81_RS11985 WP_124089914.1 2546749..2547837(+) (dprA) [Pseudomonas aeruginosa strain 2020CK-00220]

ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT

GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG

TCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC

AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT

CGAAGGCACCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA

CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC

GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG

CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC

CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC

GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCTGG

CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG

GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC

TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA

CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio cholerae strain A1552	42.781	100	0.442
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	42.781	100	0.442
dprA	Vibrio campbellii strain DS40M4	42.973	100	0.439
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.408	98.066	0.406
dprA	Legionella pneumophila strain ERS1305867	49.655	80.11	0.398
dprA	Acinetobacter baumannii D1279779	38.187	100	0.384
dprA	Acinetobacter baumannii strain A118	38.81	97.514	0.378
dprA	Glaesserella parasuis strain SC1401	47.203	79.006	0.373
dprA	Neisseria gonorrhoeae strain FA1090	44.224	83.702	0.37
dprA	Neisseria meningitidis MC58	44.333	82.873	0.367
dprA	Neisseria meningitidis strain C311	44.333	82.873	0.367
dprA	Neisseria gonorrhoeae MS11	43.894	83.702	0.367

Detailed information NTG0759470