Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   P7I81_RS11980 Genome accession   NZ_CP124648
Coordinates   2545589..2546614 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2540589..2551614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS11955 (P7I81_11955) - 2540778..2541095 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  P7I81_RS11960 (P7I81_11960) trkA 2541244..2542617 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  P7I81_RS11965 (P7I81_11965) rsmB 2542644..2543948 (-) 1305 WP_033954884.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P7I81_RS11970 (P7I81_11970) fmt 2543945..2544889 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  P7I81_RS11975 (P7I81_11975) def 2544944..2545450 (-) 507 WP_003097293.1 peptide deformylase -
  P7I81_RS11980 (P7I81_11980) tsaP 2545589..2546614 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  P7I81_RS11985 (P7I81_11985) dprA 2546749..2547837 (+) 1089 WP_124089914.1 DNA-processing protein DprA Machinery gene
  P7I81_RS11990 (P7I81_11990) - 2547878..2548435 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  P7I81_RS11995 (P7I81_11995) - 2548445..2549422 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  P7I81_RS12000 (P7I81_12000) hemF 2549613..2550530 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  P7I81_RS12005 (P7I81_12005) aroE 2550588..2551412 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=759469 P7I81_RS11980 WP_003097294.1 2545589..2546614(+) (tsaP) [Pseudomonas aeruginosa strain 2020CK-00220]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=759469 P7I81_RS11980 WP_003097294.1 2545589..2546614(+) (tsaP) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAATGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAAAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393