Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OMK57_RS18405 Genome accession   NZ_CP110264
Coordinates   3670567..3670908 (-) Length   113 a.a.
NCBI ID   WP_044159651.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3665567..3675908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS18390 (OMK57_18390) - 3665804..3668578 (+) 2775 WP_069486814.1 DEAD/DEAH box helicase -
  OMK57_RS18395 (OMK57_18395) - 3668701..3669558 (-) 858 WP_059292380.1 Cof-type HAD-IIB family hydrolase -
  OMK57_RS18400 (OMK57_18400) - 3669564..3670340 (-) 777 WP_069487005.1 DeoR/GlpR family DNA-binding transcription regulator -
  OMK57_RS18405 (OMK57_18405) ssbB 3670567..3670908 (-) 342 WP_044159651.1 single-stranded DNA-binding protein SsbB Machinery gene
  OMK57_RS18410 (OMK57_18410) - 3670986..3671369 (-) 384 WP_044159653.1 hypothetical protein -
  OMK57_RS18415 (OMK57_18415) - 3671545..3671955 (+) 411 WP_044159655.1 YwpF-like family protein -
  OMK57_RS18420 (OMK57_18420) blaOXA 3672009..3672812 (+) 804 WP_069486813.1 class D beta-lactamase -
  OMK57_RS18425 (OMK57_18425) - 3672913..3673572 (-) 660 WP_069486812.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12552.29 Da        Isoelectric Point: 8.4667

>NTDB_id=753597 OMK57_RS18405 WP_044159651.1 3670567..3670908(-) (ssbB) [Bacillus halotolerans strain HMB20199]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEVEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=753597 OMK57_RS18405 WP_044159651.1 3670567..3670908(-) (ssbB) [Bacillus halotolerans strain HMB20199]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCGGGCGCGGCGGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAGTTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGTATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40

92.92

0.372