Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   UKS_RS01995 Genome accession   NZ_AP021887
Coordinates   385338..385733 (+) Length   131 a.a.
NCBI ID   WP_000282434.1    Uniprot ID   A0A231VYA4
Organism   Streptococcus sp. 116-D4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380338..390733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01965 (UKS_03590) rpoE 380517..381104 (+) 588 WP_049494940.1 DNA-directed RNA polymerase subunit delta -
  UKS_RS01970 (UKS_03600) - 381420..383027 (+) 1608 WP_156011611.1 CTP synthase -
  UKS_RS01975 (UKS_03610) - 383213..383503 (+) 291 WP_318780010.1 DUF4651 domain-containing protein -
  UKS_RS01980 (UKS_03620) - 383500..383817 (+) 318 WP_156011615.1 thioredoxin family protein -
  UKS_RS01985 (UKS_03630) - 383832..384458 (+) 627 WP_156011617.1 DUF4479 and tRNA-binding domain-containing protein -
  UKS_RS01990 (UKS_03640) - 384500..385261 (+) 762 WP_156011619.1 SDR family NAD(P)-dependent oxidoreductase -
  UKS_RS01995 (UKS_03650) ssbB/cilA 385338..385733 (+) 396 WP_000282434.1 single-stranded DNA-binding protein Machinery gene
  UKS_RS02000 (UKS_03660) groES 385889..386173 (+) 285 WP_049499818.1 co-chaperone GroES -
  UKS_RS02005 (UKS_03670) groL 386189..387811 (+) 1623 WP_156011621.1 chaperonin GroEL -
  UKS_RS02010 (UKS_03680) - 387949..388716 (+) 768 WP_156011622.1 epoxyqueuosine reductase QueH -
  UKS_RS02015 (UKS_03690) - 388786..389319 (-) 534 WP_049494921.1 DUF402 domain-containing protein -
  UKS_RS02020 (UKS_03700) recX 389408..390184 (-) 777 WP_156011624.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14889.82 Da        Isoelectric Point: 5.9409

>NTDB_id=75342 UKS_RS01995 WP_000282434.1 385338..385733(+) (ssbB/cilA) [Streptococcus sp. 116-D4]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNIVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=75342 UKS_RS01995 WP_000282434.1 385338..385733(+) (ssbB/cilA) [Streptococcus sp. 116-D4]
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAGCGTGAAGCTGACTTTGTCAATATAGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCCAGCTACGCAACCAAAGGTAGTCTCATTTCAGTGGATGGAGAATTACGTACCCGT
CGTTTTGAGAAAAATGGTCAAATGAACTACGTGACCGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGAGAAAATAACGCAGGGCAGGATTTGGCAGATTTGGTCCTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A231VYA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment