Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OKW88_RS12140 Genome accession   NZ_CP110105
Coordinates   2386480..2386821 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain CF03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2381480..2391821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS12125 (OKW88_12110) hepAB 2381724..2384492 (+) 2769 WP_342006511.1 DEAD/DEAH box helicase -
  OKW88_RS12130 (OKW88_12115) ywpJ 2384617..2385474 (-) 858 WP_003227801.1 phosphatase YwpJ -
  OKW88_RS12135 (OKW88_12120) glcR 2385480..2386256 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  OKW88_RS12140 (OKW88_12125) ssbB 2386480..2386821 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  OKW88_RS12145 (OKW88_12130) ywpG 2386898..2387281 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  OKW88_RS12150 (OKW88_12135) ywpF 2387456..2387866 (+) 411 WP_003227794.1 YwpF-like family protein -
  OKW88_RS12155 (OKW88_12140) - 2388006..2388398 (-) 393 Protein_2397 class A sortase -
  OKW88_RS12160 - 2388472..2388624 (-) 153 Protein_2398 prealbumin-like fold domain-containing protein -
  OKW88_RS12165 (OKW88_12145) ywpD 2388658..2389494 (+) 837 WP_032722844.1 sensor histidine kinase -
  OKW88_RS12170 (OKW88_12150) mscL 2389543..2389938 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  OKW88_RS12175 (OKW88_12155) fabZ 2390010..2390435 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OKW88_RS12180 (OKW88_12160) rapD 2390627..2391691 (+) 1065 WP_014478211.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=752288 OKW88_RS12140 WP_003227798.1 2386480..2386821(-) (ssbB) [Bacillus subtilis strain CF03]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=752288 OKW88_RS12140 WP_003227798.1 2386480..2386821(-) (ssbB) [Bacillus subtilis strain CF03]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389