Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Vgang_RS11820 Genome accession   NZ_AP021869
Coordinates   2555698..2556882 (-) Length   394 a.a.
NCBI ID   WP_105902927.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2550698..2561882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11790 hemF 2551134..2552048 (-) 915 WP_105902923.1 oxygen-dependent coproporphyrinogen oxidase -
  Vgang_RS11795 - 2552057..2552614 (-) 558 WP_105903019.1 L-threonylcarbamoyladenylate synthase -
  Vgang_RS11800 purE 2552846..2553331 (+) 486 WP_105902924.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  Vgang_RS11805 - 2553337..2554473 (+) 1137 WP_105902925.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  Vgang_RS11810 - 2554541..2555161 (-) 621 WP_105902926.1 type I DNA topoisomerase -
  Vgang_RS11815 - 2555200..2555673 (-) 474 WP_211294091.1 DUF494 family protein -
  Vgang_RS11820 dprA 2555698..2556882 (-) 1185 WP_105902927.1 DNA-processing protein DprA Machinery gene
  Vgang_RS11825 - 2556879..2557979 (-) 1101 WP_105903021.1 LysM peptidoglycan-binding domain-containing protein -
  Vgang_RS11830 def 2558119..2558631 (+) 513 WP_211294093.1 peptide deformylase -
  Vgang_RS11835 fmt 2558662..2559651 (+) 990 WP_105902928.1 methionyl-tRNA formyltransferase -
  Vgang_RS11840 rsmB 2559736..2561016 (+) 1281 WP_105902929.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42721.24 Da        Isoelectric Point: 6.4468

>NTDB_id=75119 Vgang_RS11820 WP_105902927.1 2555698..2556882(-) (dprA) [Vibrio gangliei strain DSM 104291]
MNEEQLSAWLRLSFAPKLGGVALSRLMSVDSPQNLVRYSVQQLQHLGLKDTQIQYIQQDSNREVESCLQWQADSDEHHIL
SPLEPDYPYLLSQMSSHPPVLFIKGNLAALNTPQVAIVGSRHASVDGLKAAKDFAFQLAQQGLTITSGLALGIDGHAHDG
ALLANGTTVAVLGSGVEQVYPARHNGLAQRIMQNGGALVSELRPDAKPRAEHFPRRNRIISGLSQGVLVVEAAERSGSLI
TARYAIEQNRDVFALPGSIYQSGFAGTNRLLQQGAYLALNPQDIMDELNPHVSSLQSHAQHSQPQLDLTYAADGTQTANK
TQTENKTSAFTRQALPFPQLLANVGNEATPVDILAERTHIPVHEVMMQILELELAGHVVSVPGGYVLNTGNKPK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=75119 Vgang_RS11820 WP_105902927.1 2555698..2556882(-) (dprA) [Vibrio gangliei strain DSM 104291]
ATGAATGAAGAGCAACTCAGTGCGTGGCTCAGGTTGAGCTTCGCACCTAAGTTAGGCGGAGTGGCATTGTCGCGTTTGAT
GAGTGTCGACTCCCCGCAAAACTTGGTGCGATATTCAGTTCAGCAATTACAGCATCTCGGCTTAAAAGACACGCAGATTC
AATACATTCAACAAGATTCCAATCGAGAAGTGGAATCTTGTTTGCAATGGCAAGCTGACTCTGATGAACACCATATTCTT
TCCCCACTTGAGCCTGATTATCCTTATTTACTCAGCCAAATGTCTTCACATCCGCCGGTGTTGTTTATTAAAGGAAATTT
GGCCGCATTGAATACTCCACAAGTGGCGATAGTGGGTAGCCGTCATGCCAGTGTTGATGGGTTAAAGGCTGCCAAGGATT
TTGCTTTTCAACTCGCACAACAAGGGTTAACTATTACCAGTGGTTTAGCATTAGGTATCGATGGTCACGCTCATGATGGG
GCCTTACTTGCCAATGGCACTACGGTTGCCGTATTGGGTTCGGGTGTGGAGCAAGTTTACCCTGCGCGGCATAACGGTTT
GGCGCAGCGGATTATGCAAAATGGCGGAGCTTTGGTGTCGGAATTGCGACCCGATGCCAAACCGCGTGCCGAACATTTTC
CTCGCCGTAATCGCATTATTAGTGGGCTATCGCAAGGGGTTCTCGTGGTTGAGGCAGCGGAACGCAGTGGCTCTTTGATT
ACTGCGCGTTATGCAATTGAACAAAATCGCGATGTGTTTGCTTTACCTGGATCGATTTATCAATCCGGTTTTGCCGGCAC
CAATCGTTTATTGCAGCAAGGGGCGTATTTGGCCTTAAACCCACAAGATATCATGGATGAGTTAAACCCTCATGTTTCAT
CGCTTCAATCTCATGCACAACATTCGCAACCACAACTCGACTTAACTTACGCTGCAGATGGCACTCAAACCGCAAATAAA
ACGCAGACCGAAAATAAAACCTCAGCATTTACTCGCCAAGCATTGCCATTTCCACAACTGTTAGCTAACGTAGGAAATGA
GGCTACTCCAGTTGATATCTTGGCAGAGCGTACCCATATACCGGTACATGAAGTCATGATGCAAATATTAGAGCTGGAAT
TGGCTGGGCATGTGGTTTCTGTGCCAGGTGGTTATGTTCTTAATACAGGGAACAAACCAAAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)

DprA winged helix domain (DprA_WH)

(339-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

59.067

97.97

0.579
  dprA Vibrio cholerae strain A1552

52.332

97.97

0.513
  dprA Glaesserella parasuis strain SC1401

42.559

97.208

0.414
  dprA Haemophilus influenzae Rd KW20

44.38

88.071

0.391
  dprA Legionella pneumophila strain ERS1305867

41.193

89.34

0.368
  dprA Neisseria meningitidis strain C311

35.468

100

0.365
  dprA Neisseria meningitidis MC58

35.468

100

0.365
  dprA Neisseria gonorrhoeae strain FA1090

35.859

100

0.36

Multiple sequence alignment