Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   Vgang_RS11180 Genome accession   NZ_AP021869
Coordinates   2416242..2417246 (+) Length   334 a.a.
NCBI ID   WP_105902857.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2411242..2422246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11165 - 2411461..2412720 (-) 1260 WP_105902860.1 malic enzyme-like NAD(P)-binding protein -
  Vgang_RS11170 rpmE 2412877..2413095 (-) 219 WP_105902859.1 50S ribosomal protein L31 -
  Vgang_RS11175 priA 2413355..2415556 (+) 2202 WP_105902858.1 primosomal protein N' -
  Vgang_RS11180 cytR 2416242..2417246 (+) 1005 WP_105902857.1 DNA-binding transcriptional regulator CytR Regulator
  Vgang_RS11185 - 2417400..2417981 (+) 582 WP_105902856.1 SPOR domain-containing protein -
  Vgang_RS11190 hslV 2418333..2418851 (+) 519 WP_105902855.1 ATP-dependent protease subunit HslV -
  Vgang_RS11195 hslU 2418971..2420308 (+) 1338 WP_105902854.1 HslU--HslV peptidase ATPase subunit -
  Vgang_RS11200 - 2420688..2421602 (+) 915 WP_105902853.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36644.10 Da        Isoelectric Point: 6.0493

>NTDB_id=75117 Vgang_RS11180 WP_105902857.1 2416242..2417246(+) (cytR) [Vibrio gangliei strain DSM 104291]
MATMKEVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLESGYAPNSLARNLRRNESKTIIVIVPDICDPYFTEIIRG
IEDTAAEHNYLVLLGDSGQQLKRESTLVNLVFTKQADGMLLLGTDVPFDVSKPEQKNLPPLVMACEYAPELELPTVHIDN
LTAAFDVVNYLTQMGHKRIAEMSGPAEATLCQFRHQGFQQALRRAGIEMNPTYQVSGDFSLESGVAAASKLLSLPEPPTA
IFCHNDSMAIGAIQQAKKQGFKVPQDLSIVGFDDIQFSQYCDPPLTTIAQPRYEIGKQSMLMLLEVLKGREVRAGSRLLE
ANLVVRNSAAPPRR

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=75117 Vgang_RS11180 WP_105902857.1 2416242..2417246(+) (cytR) [Vibrio gangliei strain DSM 104291]
ATGGCGACAATGAAGGAGGTTGCCCAACTCGCAGGAGTTTCCACTGCTACGGTGTCCCGGGCATTGATGAACCCTGAAAA
AGTCTCCAGTGCAACGCGCAAACGTGTAGAAGATGCAGTATTAGAATCCGGTTACGCCCCCAACTCTTTGGCTCGTAACT
TACGCAGAAACGAGTCTAAAACCATTATTGTTATCGTGCCGGATATCTGTGACCCTTATTTCACTGAAATCATTCGTGGC
ATTGAAGATACCGCTGCTGAGCATAACTACTTAGTGCTTCTAGGCGATAGCGGCCAACAATTAAAACGTGAAAGCACACT
CGTCAATTTGGTGTTCACCAAACAAGCGGATGGCATGTTATTGCTTGGGACGGATGTGCCTTTTGATGTCAGCAAACCTG
AGCAAAAAAACTTACCCCCGTTAGTGATGGCTTGTGAGTACGCTCCTGAACTTGAGCTGCCAACCGTTCATATTGATAAC
CTGACTGCCGCTTTTGATGTCGTCAATTATCTCACTCAGATGGGCCACAAACGCATTGCTGAAATGTCAGGGCCGGCAGA
AGCCACGCTATGTCAATTCCGCCACCAAGGTTTCCAACAAGCACTGCGTCGTGCTGGTATTGAGATGAACCCAACTTACC
AAGTATCGGGTGATTTCAGTTTGGAATCCGGTGTCGCCGCAGCCAGTAAATTGCTCTCACTACCAGAGCCACCTACGGCG
ATTTTCTGCCATAACGACAGCATGGCGATTGGCGCGATACAGCAAGCCAAAAAACAAGGTTTTAAAGTGCCGCAGGATTT
ATCCATTGTTGGCTTTGATGACATCCAATTCTCTCAATATTGCGATCCGCCGTTGACCACTATTGCTCAACCCCGTTATG
AAATCGGCAAACAATCCATGTTGATGTTATTGGAAGTTTTAAAAGGTCGTGAAGTTCGTGCTGGCTCTCGTTTATTAGAA
GCCAATCTTGTCGTACGAAATAGCGCTGCGCCACCACGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

80.838

100

0.808
  cytR Vibrio parahaemolyticus RIMD 2210633

80.24

100

0.802

Multiple sequence alignment