Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Vgang_RS11085 Genome accession   NZ_AP021869
Coordinates   2387379..2388389 (-) Length   336 a.a.
NCBI ID   WP_105902873.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2382379..2393389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11060 aroK 2383106..2383624 (-) 519 WP_105902877.1 shikimate kinase AroK -
  Vgang_RS11065 pilQ 2383855..2385657 (-) 1803 WP_211294085.1 type IV pilus secretin PilQ Machinery gene
  Vgang_RS11070 pilP 2385700..2386209 (-) 510 WP_105902876.1 pilus assembly protein PilP Machinery gene
  Vgang_RS11075 pilO 2386206..2386790 (-) 585 WP_105902875.1 type 4a pilus biogenesis protein PilO Machinery gene
  Vgang_RS11080 pilN 2386790..2387389 (-) 600 WP_105902874.1 PilN domain-containing protein Machinery gene
  Vgang_RS11085 pilM 2387379..2388389 (-) 1011 WP_105902873.1 type IV pilus assembly protein PilM Machinery gene
  Vgang_RS11090 - 2388659..2391211 (+) 2553 WP_105902872.1 penicillin-binding protein 1A -
  Vgang_RS11095 oxyR 2391274..2392161 (-) 888 WP_105902871.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37236.92 Da        Isoelectric Point: 6.1753

>NTDB_id=75116 Vgang_RS11085 WP_105902873.1 2387379..2388389(-) (pilM) [Vibrio gangliei strain DSM 104291]
MGKSFVTGIDIGHHSIKAVVMKPAGELFELVSYKEVPATDAIFSDNHTLNHQEIVKKLKELKKQLPMMARNVVLSVPDNA
VISKLLHIDSELDEREKEFAIYQVFGQQSPFPVEELSLDYVRVESDVVKRAPTSTYQVYATRKEVIESRMDAVKKSGFKP
IVMDIQAHGLLRVWQLASQIEAEKSNWLLVDIGKSQTSVCILPPGRPAYYKDLPFGAKSIKPAPAAVDSNLSLQLDEQDE
FISELAERLTRQLSMYASVNQQYKIEGIWLTGGGATLVAIDEALSDKLNLPVEVLNPLTLLQGKVKNKDEVEPCTFGVAA
GLAIRGIQWQGGKHVA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=75116 Vgang_RS11085 WP_105902873.1 2387379..2388389(-) (pilM) [Vibrio gangliei strain DSM 104291]
ATGGGTAAATCTTTTGTCACGGGGATCGATATTGGTCATCACAGTATTAAAGCTGTGGTCATGAAACCCGCTGGAGAATT
GTTTGAACTGGTTAGTTATAAAGAAGTGCCAGCAACAGACGCTATTTTTTCAGATAACCACACATTGAATCATCAAGAGA
TTGTCAAAAAATTAAAAGAGCTGAAAAAACAGCTGCCAATGATGGCTCGAAACGTGGTGCTTTCGGTTCCTGACAACGCG
GTGATCAGTAAATTGCTGCATATTGACAGTGAACTGGATGAGCGTGAAAAAGAATTTGCGATTTATCAAGTGTTCGGGCA
GCAATCGCCATTTCCAGTTGAAGAACTCAGTCTCGATTATGTTCGAGTCGAATCAGATGTCGTTAAACGTGCGCCTACCT
CAACCTATCAAGTCTATGCCACACGTAAAGAAGTGATTGAAAGCCGGATGGATGCGGTTAAAAAGTCAGGCTTCAAACCT
ATCGTGATGGATATTCAAGCGCACGGTTTGCTACGTGTGTGGCAACTGGCTAGTCAGATCGAGGCCGAAAAAAGTAATTG
GTTGTTGGTTGATATAGGTAAAAGCCAAACGTCGGTCTGTATTTTGCCTCCTGGTCGCCCTGCGTATTACAAAGATTTGC
CGTTTGGTGCCAAAAGCATTAAGCCCGCTCCAGCTGCGGTGGACTCCAATTTAAGCCTGCAACTGGATGAACAAGATGAG
TTTATTTCTGAGTTAGCCGAGCGACTCACTCGTCAATTAAGCATGTATGCCTCTGTTAATCAGCAGTACAAAATTGAAGG
TATTTGGCTTACTGGTGGGGGGGCAACATTAGTCGCGATTGATGAAGCCTTATCTGACAAGTTAAACCTACCGGTAGAAG
TGCTTAACCCACTGACCTTGCTACAAGGCAAAGTGAAAAATAAAGATGAGGTTGAGCCTTGTACTTTTGGGGTTGCGGCA
GGCCTGGCCATTCGTGGTATTCAGTGGCAAGGAGGAAAGCATGTTGCATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(241-326)

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

51.622

100

0.521
  pilM Vibrio campbellii strain DS40M4

44.675

100

0.449

Multiple sequence alignment