Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Vgang_RS11065 Genome accession   NZ_AP021869
Coordinates   2383855..2385657 (-) Length   600 a.a.
NCBI ID   WP_211294085.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378855..2390657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11045 dam 2379524..2380345 (-) 822 WP_105902880.1 adenine-specific DNA-methyltransferase -
  Vgang_RS11050 - 2380457..2381863 (-) 1407 WP_105902879.1 SPOR domain-containing protein -
  Vgang_RS11055 aroB 2381999..2383081 (-) 1083 WP_105902878.1 3-dehydroquinate synthase -
  Vgang_RS11060 aroK 2383106..2383624 (-) 519 WP_105902877.1 shikimate kinase AroK -
  Vgang_RS11065 pilQ 2383855..2385657 (-) 1803 WP_211294085.1 type IV pilus secretin PilQ Machinery gene
  Vgang_RS11070 pilP 2385700..2386209 (-) 510 WP_105902876.1 pilus assembly protein PilP Machinery gene
  Vgang_RS11075 pilO 2386206..2386790 (-) 585 WP_105902875.1 type 4a pilus biogenesis protein PilO Machinery gene
  Vgang_RS11080 pilN 2386790..2387389 (-) 600 WP_105902874.1 PilN domain-containing protein Machinery gene
  Vgang_RS11085 pilM 2387379..2388389 (-) 1011 WP_105902873.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 64590.12 Da        Isoelectric Point: 4.5317

>NTDB_id=75112 Vgang_RS11065 WP_211294085.1 2383855..2385657(-) (pilQ) [Vibrio gangliei strain DSM 104291]
MHKGLTLAGWTSRLAVVSMMACLFISEQSAFAASASNSTAKASQTKQQAISNQFLGLDFRLNKQKEGMIVVKMASSASAV
DIKKNAQGLNIDLIQTSVTDDNLYVIDVKDFSTAVSTVEVFREEENTQLQASISGNFTYDYRIKGNDLEITVSEVKAQAK
STTTKQKTALDAENKKISINFQDIPVRNVLQLIADYNGFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGN
VVLVAPKAELDAQQKQRLEQARLQEELGDLSSELIQINFAKASDIAALIGGEGEISMLSSRGNITVDERTNSLLIRDLPN
NIEIIKGIVESLDIPVKQVQIEARIVTVSEGNLQDLGVRWGIAETNGSFSTGGTIESTVGQAGIASGRDSIDFTGAGDSK
VGIDDFLNVNLAATSSNASSIAFQVAKLGSDTLLDLELSALEAESKAEIISSPRLITTNKQPAYIEQGTEIPYLEASSSG
ATSVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGDGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSVQTS
VDKVPLLGDIPYLGALFRRSYENYGKSELLIFVTPKVILQ

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=75112 Vgang_RS11065 WP_211294085.1 2383855..2385657(-) (pilQ) [Vibrio gangliei strain DSM 104291]
ATGCATAAAGGATTAACGCTAGCAGGTTGGACTTCTCGATTGGCAGTAGTATCGATGATGGCCTGTCTATTTATCTCGGA
ACAGTCGGCTTTTGCTGCCAGTGCTTCAAACAGCACCGCTAAGGCTTCTCAAACCAAACAACAAGCCATCAGTAACCAAT
TTCTTGGCTTAGATTTTCGATTAAATAAACAAAAAGAAGGGATGATTGTTGTCAAGATGGCCTCGTCGGCATCGGCAGTT
GATATCAAGAAAAATGCTCAAGGTTTGAATATTGACTTGATTCAGACCTCAGTGACCGATGACAATCTATACGTCATTGA
TGTGAAAGATTTTTCCACTGCAGTTAGTACGGTGGAAGTTTTTCGCGAAGAAGAGAATACTCAATTACAAGCCAGCATTT
CAGGCAATTTCACTTACGATTACCGCATCAAAGGGAATGATCTAGAGATCACGGTATCTGAAGTGAAGGCTCAAGCTAAA
TCTACCACTACAAAGCAAAAAACCGCATTGGATGCTGAAAACAAAAAGATTTCGATTAACTTCCAAGATATTCCGGTACG
GAATGTGTTGCAGTTAATTGCCGATTACAATGGTTTTAACCTGGTGGTATCAGACTCAGTGACAGGCAACTTAACCTTAC
GTTTAGATGGTGTGCCGTGGCAGCAAGTGCTTGATATTATTTTGCAGGTTAAAGGTCTCGATAAGCGTGTGGAAGGTAAT
GTTGTTTTGGTTGCACCGAAAGCGGAATTGGATGCACAGCAAAAGCAACGTTTAGAACAAGCTCGTCTACAAGAAGAATT
AGGAGACTTAAGTTCTGAACTGATCCAAATTAACTTCGCTAAAGCGTCCGATATCGCCGCTCTTATCGGTGGTGAAGGGG
AAATCAGCATGCTGTCTAGCCGAGGTAATATTACGGTTGATGAACGTACTAACTCACTATTGATTCGAGATTTACCGAAT
AATATTGAGATCATTAAAGGCATTGTGGAGTCTCTGGATATCCCAGTAAAACAAGTGCAAATCGAAGCTCGTATCGTCAC
CGTGAGCGAGGGTAACTTACAAGATCTCGGGGTGCGCTGGGGGATTGCAGAAACTAATGGTTCATTTTCAACCGGTGGAA
CGATTGAGAGCACGGTCGGACAAGCGGGCATTGCATCAGGCCGAGATAGCATCGACTTTACTGGCGCTGGAGACTCCAAA
GTTGGTATTGACGATTTCTTAAACGTGAATTTAGCCGCAACCAGCTCAAATGCATCCAGTATCGCTTTCCAAGTGGCGAA
ACTGGGCTCGGATACGTTATTGGATTTAGAATTGTCGGCTTTGGAGGCGGAATCTAAAGCGGAAATTATTTCTAGCCCAC
GTTTGATTACAACCAACAAACAGCCAGCCTATATTGAACAAGGTACGGAAATCCCATATTTAGAAGCGTCTTCTAGTGGT
GCGACTTCAGTGAGCTTTAAAAAGGCGGTATTAAGTTTGAAAGTGACGCCACAAATTACCCCAGACAACCGTTTAGTATT
GGATTTAAGCGTGACTCAAGATAGACCCGGTGAAGTAGTGAAAACGGGGGATGGTGAAGCCGTAGCGATTGATACTCAAC
GTATTGGCACTCAAGTTTTGGTTGATAACGGCGAGACGGTAGTGCTTGGTGGTATTTATCAGCATTCGGTGCAAACCAGT
GTAGATAAGGTGCCATTGTTAGGCGATATTCCTTACCTAGGCGCCTTGTTCCGTCGTAGTTATGAAAACTATGGCAAAAG
TGAACTATTGATTTTTGTGACACCAAAAGTGATTTTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(273-338)

Bacterial type II and III secretion system protein (Secretin)

(440-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

72.727

91.667

0.667
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

71.48

92.333

0.66
  pilQ Vibrio cholerae strain A1552

71.48

92.333

0.66
  pilQ Pseudomonas aeruginosa PAK

39.194

100

0.405
  pilQ Legionella pneumophila strain ERS1305867

40.957

94

0.385
  pilQ Legionella pneumophila strain Lp02

40.957

94

0.385
  pilQ Acinetobacter baumannii D1279779

37.252

100

0.375
  pilQ Acinetobacter baumannii strain A118

37.252

100

0.375
  comQ Acinetobacter baylyi ADP1

36.762

98.833

0.363

Multiple sequence alignment