Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Vgang_RS11080 Genome accession   NZ_AP021869
Coordinates   2386790..2387389 (-) Length   199 a.a.
NCBI ID   WP_105902874.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2381790..2392389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11055 aroB 2381999..2383081 (-) 1083 WP_105902878.1 3-dehydroquinate synthase -
  Vgang_RS11060 aroK 2383106..2383624 (-) 519 WP_105902877.1 shikimate kinase AroK -
  Vgang_RS11065 pilQ 2383855..2385657 (-) 1803 WP_211294085.1 type IV pilus secretin PilQ Machinery gene
  Vgang_RS11070 pilP 2385700..2386209 (-) 510 WP_105902876.1 pilus assembly protein PilP Machinery gene
  Vgang_RS11075 pilO 2386206..2386790 (-) 585 WP_105902875.1 type 4a pilus biogenesis protein PilO Machinery gene
  Vgang_RS11080 pilN 2386790..2387389 (-) 600 WP_105902874.1 PilN domain-containing protein Machinery gene
  Vgang_RS11085 pilM 2387379..2388389 (-) 1011 WP_105902873.1 type IV pilus assembly protein PilM Machinery gene
  Vgang_RS11090 - 2388659..2391211 (+) 2553 WP_105902872.1 penicillin-binding protein 1A -
  Vgang_RS11095 oxyR 2391274..2392161 (-) 888 WP_105902871.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23000.58 Da        Isoelectric Point: 9.2709

>NTDB_id=75115 Vgang_RS11080 WP_105902874.1 2386790..2387389(-) (pilN) [Vibrio gangliei strain DSM 104291]
MLHDINLLPWREEKRQQYKQRFYGMVVLGVLFAAFLQWCGSLYIDHLKSEQQARNQQLQAYIAKLDKQLVNLKEIEAKHK
SILTRLRLVESLQNERNKTTDFMNLMPELVPEGVYVDKIKMSGREVEMAGVSDSTARLATMLDNFENSTWLADVEMHSII
SGKVLFGKKFQSFKLSFRFDDQPVEVANEANKVAKKGAQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=75115 Vgang_RS11080 WP_105902874.1 2386790..2387389(-) (pilN) [Vibrio gangliei strain DSM 104291]
ATGTTGCATGACATTAACTTGCTGCCTTGGCGTGAAGAGAAGCGGCAGCAATATAAACAACGTTTTTACGGCATGGTGGT
GCTTGGTGTTCTATTTGCAGCCTTTTTGCAGTGGTGCGGTAGCTTGTATATCGATCATTTGAAAAGTGAGCAGCAGGCTC
GAAACCAGCAATTACAAGCGTATATCGCCAAGCTGGATAAGCAGTTGGTGAACCTGAAAGAAATCGAAGCTAAGCATAAA
TCGATTTTGACTCGTCTGCGCTTAGTGGAATCGCTACAAAATGAACGTAATAAAACCACAGACTTTATGAACTTGATGCC
AGAGCTCGTCCCTGAAGGTGTCTATGTAGACAAAATTAAGATGAGCGGCAGAGAAGTTGAGATGGCTGGGGTAAGCGATA
GCACAGCACGTTTGGCGACCATGTTAGATAACTTTGAAAACTCTACTTGGCTCGCGGATGTTGAAATGCACTCGATCATT
TCAGGCAAAGTGTTATTTGGTAAGAAATTTCAAAGTTTCAAATTGTCATTCCGATTTGATGATCAACCCGTTGAAGTCGC
AAATGAAGCGAACAAAGTGGCTAAAAAAGGAGCGCAGTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

57.542

89.95

0.518
  pilN Vibrio campbellii strain DS40M4

52.973

92.965

0.492

Multiple sequence alignment