Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   Vgang_RS11070 Genome accession   NZ_AP021869
Coordinates   2385700..2386209 (-) Length   169 a.a.
NCBI ID   WP_105902876.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2380700..2391209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS11055 aroB 2381999..2383081 (-) 1083 WP_105902878.1 3-dehydroquinate synthase -
  Vgang_RS11060 aroK 2383106..2383624 (-) 519 WP_105902877.1 shikimate kinase AroK -
  Vgang_RS11065 pilQ 2383855..2385657 (-) 1803 WP_211294085.1 type IV pilus secretin PilQ Machinery gene
  Vgang_RS11070 pilP 2385700..2386209 (-) 510 WP_105902876.1 pilus assembly protein PilP Machinery gene
  Vgang_RS11075 pilO 2386206..2386790 (-) 585 WP_105902875.1 type 4a pilus biogenesis protein PilO Machinery gene
  Vgang_RS11080 pilN 2386790..2387389 (-) 600 WP_105902874.1 PilN domain-containing protein Machinery gene
  Vgang_RS11085 pilM 2387379..2388389 (-) 1011 WP_105902873.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18472.31 Da        Isoelectric Point: 8.2566

>NTDB_id=75113 Vgang_RS11070 WP_105902876.1 2385700..2386209(-) (pilP) [Vibrio gangliei strain DSM 104291]
MIKPTLTLLSVALLAGCEQSNDSIESFISQVENQSRKEIAQLEPEKTFKATKYNGAQLREPFSLPAVAVANQPRIKQDCW
QPGLRSKTGALEQYPLEQLHLRGVMGSKGSISGLVQTPQGTLVEVLAGEYVGLNNGKVAEVTPQFILIKETLPDGLGCWQ
QRNVKLALK

Nucleotide


Download         Length: 510 bp        

>NTDB_id=75113 Vgang_RS11070 WP_105902876.1 2385700..2386209(-) (pilP) [Vibrio gangliei strain DSM 104291]
ATGATAAAACCCACTTTAACCTTGCTTTCCGTCGCGTTACTAGCGGGCTGTGAGCAATCTAATGACTCTATTGAGAGCTT
TATTTCTCAAGTTGAAAACCAATCGCGCAAAGAGATAGCGCAGCTGGAACCAGAAAAAACATTTAAAGCAACCAAGTACA
ACGGCGCACAGTTACGTGAACCGTTCAGTTTGCCTGCAGTTGCGGTCGCCAATCAGCCTCGTATTAAACAAGACTGTTGG
CAACCTGGTTTGCGCAGTAAAACCGGAGCGCTTGAGCAATACCCATTAGAGCAATTGCATCTGCGTGGGGTGATGGGCAG
TAAAGGCAGTATTTCCGGGTTAGTTCAAACGCCACAGGGCACATTGGTTGAAGTCCTGGCGGGCGAATACGTTGGCTTGA
ACAACGGCAAAGTGGCAGAAGTCACACCGCAATTTATTTTAATCAAAGAAACCCTCCCAGATGGCTTGGGATGTTGGCAA
CAGCGAAACGTGAAGTTAGCGCTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

58.182

97.633

0.568
  pilP Vibrio campbellii strain DS40M4

51.19

99.408

0.509

Multiple sequence alignment