Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   K6J99_RS02355 Genome accession   NZ_AP024623
Coordinates   465077..465511 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BEST3102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460077..470511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J99_RS02325 (BsBEST3102_04120) ydaD 460727..461587 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  K6J99_RS02330 (BsBEST3102_04130) lyxE 461603..462106 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  K6J99_RS02335 (BsBEST3102_04140) ydaF 462192..462743 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  K6J99_RS02340 (BsBEST3102_04150) ydaG 462821..463243 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  K6J99_RS02345 (BsBEST3102_04160) amj 463749..464558 (+) 810 WP_003234394.1 lipid II flippase Amj -
  K6J99_RS02350 (BsBEST3102_04170) ydzA 464602..464892 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  K6J99_RS02355 (BsBEST3102_04180) lrpC 465077..465511 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  K6J99_RS02360 (BsBEST3102_04190) topB 465576..467759 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  K6J99_RS02365 (BsBEST3102_04200) ephJ 467962..469050 (+) 1089 WP_003246551.1 lipoprotein -
  K6J99_RS02370 (BsBEST3102_04210) epsK 469031..469882 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=73816 K6J99_RS02355 WP_003246585.1 465077..465511(+) (lrpC) [Bacillus subtilis strain BEST3102]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=73816 K6J99_RS02355 WP_003246585.1 465077..465511(+) (lrpC) [Bacillus subtilis strain BEST3102]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment