Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FPG46_RS08500 Genome accession   NZ_AP019751
Coordinates   1692048..1692494 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JRA307     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687048..1697494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPG46_RS08470 (SAJRA307_15870) gcvPA 1687974..1689320 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FPG46_RS08475 (SAJRA307_15880) gcvT 1689340..1690431 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FPG46_RS08480 (SAJRA307_15890) - 1690590..1691114 (-) 525 WP_001015121.1 shikimate kinase -
  FPG46_RS08485 - 1691104..1691250 (-) 147 WP_001789879.1 hypothetical protein -
  FPG46_RS08490 (SAJRA307_15900) comGF 1691347..1691844 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  FPG46_RS08495 (SAJRA307_15910) comGE 1691762..1692061 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  FPG46_RS08500 (SAJRA307_15920) comGD 1692048..1692494 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  FPG46_RS08505 (SAJRA307_15930) comGC 1692472..1692783 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  FPG46_RS08510 (SAJRA307_15940) comGB 1692797..1693867 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  FPG46_RS08515 (SAJRA307_15950) comGA 1693839..1694813 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  FPG46_RS08520 (SAJRA307_15960) - 1694865..1695488 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  FPG46_RS08525 (SAJRA307_15970) - 1695485..1695814 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FPG46_RS08530 (SAJRA307_15980) - 1695814..1696800 (-) 987 WP_000161314.1 ROK family glucokinase -
  FPG46_RS08535 (SAJRA307_15990) - 1696797..1697000 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=73815 FPG46_RS08500 WP_001788899.1 1692048..1692494(-) (comGD) [Staphylococcus aureus strain JRA307]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=73815 FPG46_RS08500 WP_001788899.1 1692048..1692494(-) (comGD) [Staphylococcus aureus strain JRA307]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment