Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OD459_RS16010 Genome accession   NZ_CP107027
Coordinates   3100751..3101119 (+) Length   122 a.a.
NCBI ID   WP_222499293.1    Uniprot ID   -
Organism   Cytobacillus firmus strain M7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3095751..3106119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD459_RS15975 (OD459_15975) - 3095832..3096833 (+) 1002 WP_048007967.1 rod shape-determining protein -
  OD459_RS15980 (OD459_15980) - 3097040..3097879 (+) 840 WP_263599229.1 flagellar hook-basal body protein -
  OD459_RS15985 (OD459_15985) - 3097914..3098741 (+) 828 WP_258751402.1 flagellar hook-basal body protein -
  OD459_RS15990 (OD459_15990) - 3098760..3099029 (+) 270 WP_048007970.1 DNA-directed RNA polymerase subunit beta -
  OD459_RS15995 (OD459_15995) fabZ 3099154..3099582 (+) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OD459_RS16000 (OD459_16000) - 3099651..3100007 (+) 357 WP_227888420.1 hypothetical protein -
  OD459_RS16005 (OD459_16005) - 3100027..3100485 (-) 459 WP_048007973.1 YwpF-like family protein -
  OD459_RS16010 (OD459_16010) ssbB 3100751..3101119 (+) 369 WP_222499293.1 single-stranded DNA-binding protein Machinery gene
  OD459_RS16015 (OD459_16015) - 3101125..3101316 (+) 192 WP_227888716.1 hypothetical protein -
  OD459_RS16020 (OD459_16020) - 3101463..3101864 (-) 402 WP_163142370.1 helix-turn-helix domain-containing protein -
  OD459_RS16025 (OD459_16025) - 3102070..3102456 (+) 387 WP_163142372.1 hypothetical protein -
  OD459_RS16030 (OD459_16030) - 3102464..3105283 (-) 2820 WP_263599230.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14132.15 Da        Isoelectric Point: 9.7402

>NTDB_id=737456 OD459_RS16010 WP_222499293.1 3100751..3101119(+) (ssbB) [Cytobacillus firmus strain M7]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGDIEADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDISVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=737456 OD459_RS16010 WP_222499293.1 3100751..3101119(+) (ssbB) [Cytobacillus firmus strain M7]
ATGATCAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAATCAGAAGGGTGATATCGAAGCAGATTTTGTGCAGTGCACTTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTACGTAACAGAGGTAGTAGCGGAATCCGTCCGTTTTCTTGAACGGAAGAA
GACAGAGGACATTTCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

87.705

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.852

88.525

0.459
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.418
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.418
  ssbA Streptococcus mutans UA159

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

87.705

0.377