Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   OCJ37_RS05145 Genome accession   NZ_CP106869
Coordinates   1230081..1230476 (+) Length   131 a.a.
NCBI ID   WP_263112615.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1225081..1235476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS05125 (OCJ37_05125) - 1225480..1226814 (+) 1335 WP_263112611.1 HAMP domain-containing sensor histidine kinase -
  OCJ37_RS05130 (OCJ37_05130) coaE 1226933..1227553 (-) 621 WP_263112612.1 dephospho-CoA kinase -
  OCJ37_RS05135 (OCJ37_05135) - 1227567..1228430 (-) 864 WP_263112613.1 A24 family peptidase -
  OCJ37_RS05140 (OCJ37_05140) pilC 1228437..1229696 (-) 1260 WP_263112614.1 type II secretion system F family protein Machinery gene
  OCJ37_RS05145 (OCJ37_05145) pilA/pilAI 1230081..1230476 (+) 396 WP_263112615.1 pilin Machinery gene
  OCJ37_RS20995 - 1230533..1231006 (+) 474 WP_317633216.1 pilin -
  OCJ37_RS05160 (OCJ37_05160) - 1231065..1232879 (+) 1815 WP_263112616.1 hypothetical protein -
  OCJ37_RS05165 (OCJ37_05165) - 1232963..1234081 (-) 1119 WP_263112617.1 glycosyltransferase family 4 protein -
  OCJ37_RS05170 (OCJ37_05170) - 1234482..1235357 (+) 876 WP_263112618.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13588.79 Da        Isoelectric Point: 9.2402

>NTDB_id=736179 OCJ37_RS05145 WP_263112615.1 1230081..1230476(+) (pilA/pilAI) [Xanthomonas sp. AM6]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQFEVLKNEGSTFSQPDAIGLSTNTARCTI
AITANSITCTLKGNANKIAGKVITLTRSTTGGTWSCSGGALDAKYKPAGCS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=736179 OCJ37_RS05145 WP_263112615.1 1230081..1230476(+) (pilA/pilAI) [Xanthomonas sp. AM6]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATTCTGGCCGCCATTGCGCT
GCCGATGTACCAGGACTATGTCGCCAAGTCGCAGGCGACTGCCGGCCTGGCCGAGATCACCCCCGGCAAGACGCAGTTCG
AAGTGCTGAAGAACGAGGGCAGCACGTTCAGTCAGCCCGATGCCATTGGTCTCAGCACGAACACCGCCCGCTGCACGATC
GCCATCACCGCTAACTCGATCACCTGCACCCTCAAGGGCAATGCGAACAAGATCGCAGGCAAGGTCATCACCCTGACCCG
CAGCACCACTGGCGGCACCTGGAGTTGCAGCGGCGGCGCGCTGGATGCCAAGTACAAGCCGGCTGGCTGCAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

56.618

100

0.588
  pilA/pilAII Pseudomonas stutzeri DSM 10701

50.746

100

0.519
  pilA Acinetobacter baumannii strain A118

47.857

100

0.511
  pilA Pseudomonas aeruginosa PAK

41.333

100

0.473
  pilA2 Legionella pneumophila str. Paris

43.796

100

0.458
  pilA2 Legionella pneumophila strain ERS1305867

43.704

100

0.45
  comP Acinetobacter baylyi ADP1

39.189

100

0.443
  pilA/pilA1 Eikenella corrodens VA1

35.762

100

0.412
  pilA Vibrio parahaemolyticus RIMD 2210633

42.276

93.893

0.397
  pilA Ralstonia pseudosolanacearum GMI1000

37.594

100

0.382