Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCJ37_RS05140 Genome accession   NZ_CP106869
Coordinates   1228437..1229696 (-) Length   419 a.a.
NCBI ID   WP_263112614.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223437..1234696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS05115 (OCJ37_05115) - 1224337..1224795 (+) 459 WP_263112610.1 hypothetical protein -
  OCJ37_RS05120 (OCJ37_05120) - 1224810..1225487 (+) 678 WP_263113589.1 response regulator transcription factor -
  OCJ37_RS05125 (OCJ37_05125) - 1225480..1226814 (+) 1335 WP_263112611.1 HAMP domain-containing sensor histidine kinase -
  OCJ37_RS05130 (OCJ37_05130) coaE 1226933..1227553 (-) 621 WP_263112612.1 dephospho-CoA kinase -
  OCJ37_RS05135 (OCJ37_05135) - 1227567..1228430 (-) 864 WP_263112613.1 A24 family peptidase -
  OCJ37_RS05140 (OCJ37_05140) pilC 1228437..1229696 (-) 1260 WP_263112614.1 type II secretion system F family protein Machinery gene
  OCJ37_RS05145 (OCJ37_05145) pilA/pilAI 1230081..1230476 (+) 396 WP_263112615.1 pilin Machinery gene
  OCJ37_RS20995 - 1230533..1231006 (+) 474 WP_317633216.1 pilin -
  OCJ37_RS05160 (OCJ37_05160) - 1231065..1232879 (+) 1815 WP_263112616.1 hypothetical protein -
  OCJ37_RS05165 (OCJ37_05165) - 1232963..1234081 (-) 1119 WP_263112617.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45695.00 Da        Isoelectric Point: 10.1183

>NTDB_id=736178 OCJ37_RS05140 WP_263112614.1 1228437..1229696(-) (pilC) [Xanthomonas sp. AM6]
MSATRSAVPKEPVARNTSQQLPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPIQFDELYRNLVKAGEGAGVLE
TVLETVAAYKENIEALKGKIKKALFYPAMVVAVALLVSSILLVWVVPQFEEVFKGFGADLPAFTQMIVAASRFMVSYWWI
LLIVLLGSVIGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFARTLAVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=736178 OCJ37_RS05140 WP_263112614.1 1228437..1229696(-) (pilC) [Xanthomonas sp. AM6]
ATGTCCGCAACTCGTAGCGCAGTACCCAAAGAGCCTGTCGCGCGCAACACCAGCCAGCAGCTGCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAATGCCAACCTGTTGCGTGCGGAGCTGCGCCGCC
AGGGCATTACGCCGTCGGTGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCGCCGCCGGCAGCAAGATCAGCCCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGCGTCCCCATCGTCGGGTCGCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATCCGCACCGACATCGAGGGCGGTTCATCGCTTTATGAGG
CGATCAGCAAGCATCCTATCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACGGTGCTGGAAACGGTCGCGGCCTACAAGGAAAACATCGAGGCCTTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTGGTGGCAGTCGCCCTGCTGGTCAGCTCGATCCTGCTGGTCTGGGTCGTGCCGCAGTTCGAAGAAGTGTTCA
AGGGCTTTGGTGCCGACCTACCGGCGTTCACGCAAATGATCGTCGCCGCCTCTCGTTTCATGGTTTCCTATTGGTGGATA
CTGCTGATTGTGCTGCTAGGCAGCGTCATCGGCTTCATCTTTGCCTATAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCGCGCTTCGCGCGAACACTTGCAG
TGACTTTCCGTGCCGGCGTGCCATTGGTCGAGGCGCTGGACATCGTCGCTGGCGCCACCGGCAACAGTGTCTACGAGAAG
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTATCCGGTCAACGTGGCGATGAAGCAGGCCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCGGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTGGATGCGCTGAGCAGCCTGATCGAACCGCTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.228

96.42

0.504
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.511

0.499
  pilC Acinetobacter baylyi ADP1

51.225

97.375

0.499
  pilC Acinetobacter baumannii D1279779

51.225

97.375

0.499
  pilG Neisseria gonorrhoeae MS11

43.5

95.465

0.415
  pilG Neisseria meningitidis 44/76-A

43

95.465

0.411
  pilC Vibrio cholerae strain A1552

41.481

96.659

0.401
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379