Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OCJ37_RS04585 Genome accession   NZ_CP106869
Coordinates   1108376..1109434 (+) Length   352 a.a.
NCBI ID   WP_343237551.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103376..1114434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS04570 (OCJ37_04570) - 1104006..1104824 (-) 819 WP_263112509.1 DUF4375 domain-containing protein -
  OCJ37_RS04575 (OCJ37_04575) - 1104875..1105522 (-) 648 WP_263112510.1 hypothetical protein -
  OCJ37_RS04580 (OCJ37_04580) - 1105722..1108157 (-) 2436 WP_263112511.1 penicillin-binding protein 1A -
  OCJ37_RS04585 (OCJ37_04585) pilM 1108376..1109434 (+) 1059 WP_343237551.1 pilus assembly protein PilM Machinery gene
  OCJ37_RS04590 (OCJ37_04590) - 1109434..1110204 (+) 771 WP_263112512.1 PilN domain-containing protein -
  OCJ37_RS04595 (OCJ37_04595) - 1110201..1110875 (+) 675 WP_263112513.1 type 4a pilus biogenesis protein PilO -
  OCJ37_RS04600 (OCJ37_04600) - 1110872..1111411 (+) 540 WP_263112514.1 pilus assembly protein PilP -
  OCJ37_RS04605 (OCJ37_04605) - 1111432..1113336 (+) 1905 WP_263112515.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37702.31 Da        Isoelectric Point: 4.4501

>NTDB_id=736177 OCJ37_RS04585 WP_343237551.1 1108376..1109434(+) (pilM) [Xanthomonas sp. AM6]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENEMEAQVELEAVNYIPYPIDEVNLDFEVLGSIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=736177 OCJ37_RS04585 WP_343237551.1 1108376..1109434(+) (pilM) [Xanthomonas sp. AM6]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACTGCGGTCAAGCTGTTGCAGCTGTC
GCGTAGCGGCAACCGGTTCCGCGTAGAGCACTACGCCGTGGAGCCCTTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAAGCCGTGGGCGAAGCGATTCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCGGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAGCTCGACGAGAACGAGATGGAAGCGCAGGTCGA
GCTGGAAGCGGTCAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGACTTCGAGGTGCTGGGCAGCATCCCCAACA
ACCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGGTCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTGGCCAGCGAACTGCCGGT
GGCGGCCGACGGCGTGGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGATCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCCGCCCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAACTGGGCGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTCGGGCCGAAGGTCCAGGCGCACGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.429

99.432

0.472