Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCJ37_RS02130 Genome accession   NZ_CP106869
Coordinates   492930..494489 (-) Length   519 a.a.
NCBI ID   WP_263112071.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 487930..499489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS02110 (OCJ37_02110) - 488771..489277 (+) 507 WP_263112066.1 preprotein translocase subunit SecD -
  OCJ37_RS02115 (OCJ37_02115) ubiA 489813..490715 (-) 903 WP_263112068.1 4-hydroxybenzoate octaprenyltransferase -
  OCJ37_RS02125 (OCJ37_02125) - 491843..492673 (+) 831 WP_263112069.1 alpha/beta hydrolase -
  OCJ37_RS02130 (OCJ37_02130) comM 492930..494489 (-) 1560 WP_263112071.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCJ37_RS02135 (OCJ37_02135) - 494503..494772 (-) 270 WP_263112072.1 accessory factor UbiK family protein -
  OCJ37_RS02140 (OCJ37_02140) - 494949..495287 (+) 339 WP_263112073.1 P-II family nitrogen regulator -
  OCJ37_RS02145 (OCJ37_02145) - 495397..495984 (+) 588 WP_263112074.1 hypothetical protein -
  OCJ37_RS02150 (OCJ37_02150) speE 496227..497078 (-) 852 WP_263112075.1 polyamine aminopropyltransferase -
  OCJ37_RS02155 (OCJ37_02155) speA 497379..499268 (+) 1890 WP_263112076.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 55119.82 Da        Isoelectric Point: 8.5202

>NTDB_id=736176 OCJ37_RS02130 WP_263112071.1 492930..494489(-) (comM) [Xanthomonas sp. AM6]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLVVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAPP
GESSAAVRARVEQARQRQLARAGRPNGQLGHGDTLRDCRLHPRDEALLEHAIDRLRLSARSLHRILRVARTIADLDGHDA
IATAHLTEAIGYRQLDRGEAASSQPGSFARADEARYATR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=736176 OCJ37_RS02130 WP_263112071.1 492930..494489(-) (comM) [Xanthomonas sp. AM6]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTCCGGGTCGAGGTCCATCTGTCCGG
CGGGCTGCCGGCCACGCAGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGACCGCGTGCGTGCCGCCATCC
TGTGCGCGCAGTACGAGTTCCCGGCCCGGCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATTCTTGCCGCAGCCGGGCAACTCGACCCGCAGGTGCTCGGGCAATACGAATTCCT
CGGCGAGCTGGCCCTGACCGGCGAACTGCGCCCGGTCGACGGCGTGCTGCCGGCGGCATTGGCCGCCGCGCAGGCCGGGC
GCACGCTGGTGGTGCCGGCCGGCAACGGTCCCGAGGCCGCCCTGGCGCAGCACGTGCAGGCCTTCACCGCGCGCACCCTG
CTCGAGGTCTGCGCGCTGTTGAACGGCACCAAGACCCTGCCGGCCGCCGAAGCCCTGCCGGCCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCCGCCGGCCATCACCACCTGTTGC
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAGCGCCCGTACCGGGC
TCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCCGGCGAGATCTCGCTGGCGCATC
ACGGGGTGCTGTTCCTGGACGAACTGCCCGAGTGGAACCGGCACGCGCTGGAGGTGCTGCGCGAACCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGCGCCGCGCGCAGCGCCGAGTTCCCGGCCCGCTTCCAACTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGCTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCACGCATCTCCG
GCCCCTTGCTGGACCGTATCGACCTGCACGTGGACGTGCCGCGGCTGCCGCCGCAGGCGCTGCGCGCCGACGCCCCGCCA
GGCGAAAGCAGCGCCGCAGTGCGCGCGCGGGTGGAGCAGGCAAGGCAACGCCAGTTGGCGCGAGCCGGCCGTCCCAACGG
CCAGCTCGGCCATGGCGACACCTTGCGCGACTGCCGCCTGCACCCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGGCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCGCGGACCATCGCCGATCTGGACGGCCACGACGCG
ATCGCCACCGCGCACCTGACCGAAGCGATCGGCTATCGGCAACTGGATCGGGGCGAGGCGGCGTCTTCGCAACCGGGCTC
CTTCGCGCGCGCTGACGAAGCGCGGTACGCGACGCGATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.713

96.146

0.545
  comM Vibrio campbellii strain DS40M4

54.582

96.724

0.528
  comM Haemophilus influenzae Rd KW20

54.365

97.11

0.528
  comM Glaesserella parasuis strain SC1401

52.778

97.11

0.513
  comM Legionella pneumophila str. Paris

50.397

97.11

0.489
  comM Legionella pneumophila strain ERS1305867

50.397

97.11

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

97.688

0.434