Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N7988_RS10495 Genome accession   NZ_CP106675
Coordinates   2024846..2025181 (+) Length   111 a.a.
NCBI ID   WP_098348048.1    Uniprot ID   -
Organism   Bacillus cereus strain SRCM116293     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2019846..2030181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7988_RS10470 (N7988_10470) - 2020085..2020867 (-) 783 WP_000499720.1 hypothetical protein -
  N7988_RS10475 (N7988_10475) - 2020977..2021624 (+) 648 WP_000165966.1 HD domain-containing protein -
  N7988_RS10480 (N7988_10480) - 2021621..2023516 (+) 1896 WP_098202774.1 ABC-F family ATP-binding cassette domain-containing protein -
  N7988_RS10485 (N7988_10485) - 2023592..2024323 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  N7988_RS10490 (N7988_10490) - 2024430..2024684 (+) 255 WP_000975130.1 DUF4318 domain-containing protein -
  N7988_RS10495 (N7988_10495) ssbA 2024846..2025181 (+) 336 WP_098348048.1 single-stranded DNA-binding protein Machinery gene
  N7988_RS10500 (N7988_10500) - 2025513..2025674 (+) 162 WP_179879798.1 Imm26 family immunity protein -
  N7988_RS10505 (N7988_10505) - 2025655..2025978 (+) 324 WP_098348049.1 hypothetical protein -
  N7988_RS10510 (N7988_10510) - 2026273..2027400 (+) 1128 WP_098348050.1 conserved virulence factor C family protein -
  N7988_RS10515 (N7988_10515) - 2027404..2027787 (+) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  N7988_RS10520 (N7988_10520) - 2027871..2028305 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  N7988_RS10525 (N7988_10525) - 2028355..2029131 (+) 777 WP_098348051.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12727.56 Da        Isoelectric Point: 9.4344

>NTDB_id=734030 N7988_RS10495 WP_098348048.1 2024846..2025181(+) (ssbA) [Bacillus cereus strain SRCM116293]
MMNRVVLIGRLTKEPELYYTKQGVAYGRICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=734030 N7988_RS10495 WP_098348048.1 2024846..2025181(+) (ssbA) [Bacillus cereus strain SRCM116293]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGG
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

95.495

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387